本文整理汇总了Python中doekbase.data_api.annotation.genome_annotation.api.GenomeAnnotationAPI.get_taxon方法的典型用法代码示例。如果您正苦于以下问题：Python GenomeAnnotationAPI.get_taxon方法的具体用法？Python GenomeAnnotationAPI.get_taxon怎么用？Python GenomeAnnotationAPI.get_taxon使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类doekbase.data_api.annotation.genome_annotation.api.GenomeAnnotationAPI的用法示例。
在下文中一共展示了GenomeAnnotationAPI.get_taxon方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: get_taxon
# 需要导入模块: from doekbase.data_api.annotation.genome_annotation.api import GenomeAnnotationAPI [as 别名]
# 或者: from doekbase.data_api.annotation.genome_annotation.api.GenomeAnnotationAPI import get_taxon [as 别名]
def get_taxon(self, ctx, ref):
"""
Retrieve the Taxon associated with this GenomeAnnotation.
@return Reference to TaxonAPI object
:param ref: instance of type "ObjectReference"
:returns: instance of type "ObjectReference"
"""
# ctx is the context object
# return variables are: returnVal
#BEGIN get_taxon
ga = GenomeAnnotationAPI_local(self.services, ctx['token'], ref)
returnVal = ga.get_taxon(ref_only=True)
#END get_taxon
# At some point might do deeper type checking...
if not isinstance(returnVal, basestring):
raise ValueError('Method get_taxon return value ' +
'returnVal is not type basestring as required.')
# return the results
return [returnVal]示例2:
# 需要导入模块: from doekbase.data_api.annotation.genome_annotation.api import GenomeAnnotationAPI [as 别名]
# 或者: from doekbase.data_api.annotation.genome_annotation.api.GenomeAnnotationAPI import get_taxon [as 别名]
'num_contigs' : 0,
'contig_lengths' : [],
'contig_ids' : [],
'source' : "KBase",
'source_id' : sys.argv[6],
# 'md5' : "",
'taxonomy' : "Unknown",
'gc_content' : 0.5,
'complete' : 1,
'features' : []
};
taxon = {};
success = 0;
try:
taxon = ga.get_taxon();
success = 1;
except Exception, e:
success = 0
if success == 1:
try:
gto['scientific_name'] = taxon.get_scientific_name()
except Exception, e:
success = 0
try:
gto['domain'] = taxon.get_domain()
except Exception, e:
success = 0
try:
gto['genetic_code'] = taxon.get_genetic_code()