本文整理汇总了Python中doekbase.data_api.annotation.genome_annotation.api.GenomeAnnotationAPI.get_mrna_by_exons方法的典型用法代码示例。如果您正苦于以下问题：Python GenomeAnnotationAPI.get_mrna_by_exons方法的具体用法？Python GenomeAnnotationAPI.get_mrna_by_exons怎么用？Python GenomeAnnotationAPI.get_mrna_by_exons使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类doekbase.data_api.annotation.genome_annotation.api.GenomeAnnotationAPI的用法示例。
在下文中一共展示了GenomeAnnotationAPI.get_mrna_by_exons方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: get_mrna_exons
# 需要导入模块: from doekbase.data_api.annotation.genome_annotation.api import GenomeAnnotationAPI [as 别名]
# 或者: from doekbase.data_api.annotation.genome_annotation.api.GenomeAnnotationAPI import get_mrna_by_exons [as 别名]
def get_mrna_exons(self, ctx, ref, mrna_id_list):
"""
Retrieve Exon information for each mRNA ID.
@param mrna_id_list List of mRNA Feature IDS for which to retrieve exons.
If empty, returns data for all exons.
@return Mapping of mRNA Feature IDs to a list of exons (:js:data:`Exon_data`).
:param ref: instance of type "ObjectReference"
:param mrna_id_list: instance of list of String
:returns: instance of mapping from String to list of type "Exon_data"
-> structure: parameter "exon_location" of type "Region" ->
structure: parameter "contig_id" of String, parameter "strand" of
String, parameter "start" of Long, parameter "length" of Long,
parameter "exon_dna_sequence" of String, parameter "exon_ordinal"
of Long
"""
# ctx is the context object
# return variables are: returnVal
#BEGIN get_mrna_exons
ga = GenomeAnnotationAPI_local(self.services, ctx['token'], ref)
returnVal = ga.get_mrna_by_exons(mrna_id_list)
#END get_mrna_exons
# At some point might do deeper type checking...
if not isinstance(returnVal, dict):
raise ValueError('Method get_mrna_exons return value ' +
'returnVal is not type dict as required.')
# return the results
return [returnVal]