本文整理汇总了Python中doekbase.data_api.annotation.genome_annotation.api.GenomeAnnotationAPI.get_feature_ids方法的典型用法代码示例。如果您正苦于以下问题：Python GenomeAnnotationAPI.get_feature_ids方法的具体用法？Python GenomeAnnotationAPI.get_feature_ids怎么用？Python GenomeAnnotationAPI.get_feature_ids使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类doekbase.data_api.annotation.genome_annotation.api.GenomeAnnotationAPI的用法示例。
在下文中一共展示了GenomeAnnotationAPI.get_feature_ids方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: get_feature_ids
# 需要导入模块: from doekbase.data_api.annotation.genome_annotation.api import GenomeAnnotationAPI [as 别名]
# 或者: from doekbase.data_api.annotation.genome_annotation.api.GenomeAnnotationAPI import get_feature_ids [as 别名]
def get_feature_ids(self, ctx, ref, filters, group_type):
"""
Retrieve Feature IDs, optionally filtered by type, region, function, alias.
@param filters Dictionary of filters that can be applied to contents.
If this is empty or missing, all Feature IDs will be returned.
@param group_type How to group results, which is a single string matching one
of the values for the ``filters`` parameter.
@return Grouped mapping of features.
:param ref: instance of type "ObjectReference"
:param filters: instance of type "Feature_id_filters" (* * Filters
passed to :meth:`get_feature_ids`) -> structure: parameter
"type_list" of list of String, parameter "region_list" of list of
type "Region" -> structure: parameter "contig_id" of String,
parameter "strand" of String, parameter "start" of Long, parameter
"length" of Long, parameter "function_list" of list of String,
parameter "alias_list" of list of String
:param group_type: instance of String
:returns: instance of type "Feature_id_mapping" -> structure:
parameter "by_type" of mapping from String to list of String,
parameter "by_region" of mapping from String to mapping from
String to mapping from String to list of String, parameter
"by_function" of mapping from String to list of String, parameter
"by_alias" of mapping from String to list of String
"""
# ctx is the context object
# return variables are: returnVal
#BEGIN get_feature_ids
ga = GenomeAnnotationAPI_local(self.services, ctx['token'], ref)
if group_type is None:
returnVal = ga.get_feature_ids(filters)
else:
returnVal = ga.get_feature_ids(filters, group_type)
#END get_feature_ids
# At some point might do deeper type checking...
if not isinstance(returnVal, dict):
raise ValueError('Method get_feature_ids return value ' +
'returnVal is not type dict as required.')
# return the results
return [returnVal]