本文整理汇总了Python中doekbase.data_api.annotation.genome_annotation.api.GenomeAnnotationAPI.get_cds_by_gene方法的典型用法代码示例。如果您正苦于以下问题：Python GenomeAnnotationAPI.get_cds_by_gene方法的具体用法？Python GenomeAnnotationAPI.get_cds_by_gene怎么用？Python GenomeAnnotationAPI.get_cds_by_gene使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类doekbase.data_api.annotation.genome_annotation.api.GenomeAnnotationAPI的用法示例。
在下文中一共展示了GenomeAnnotationAPI.get_cds_by_gene方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: get_cds_by_gene
# 需要导入模块: from doekbase.data_api.annotation.genome_annotation.api import GenomeAnnotationAPI [as 别名]
# 或者: from doekbase.data_api.annotation.genome_annotation.api.GenomeAnnotationAPI import get_cds_by_gene [as 别名]
def get_cds_by_gene(self, ctx, ref, gene_id_list):
"""
Retrieves coding sequence Features (cds) for given gene Feature IDs.
@param gene_id_list List of gene Feature IDS for which to retrieve CDS.
If empty, returns data for all features.
@return Mapping of gene Feature IDs to a list of CDS Feature IDs.
:param ref: instance of type "ObjectReference"
:param gene_id_list: instance of list of String
:returns: instance of mapping from String to list of String
"""
# ctx is the context object
# return variables are: returnVal
#BEGIN get_cds_by_gene
ga = GenomeAnnotationAPI_local(self.services, ctx['token'], ref)
if not gene_id_list:
returnVal = ga.get_cds_by_gene([])
else:
returnVal = ga.get_cds_by_gene(gene_id_list)
#END get_cds_by_gene
# At some point might do deeper type checking...
if not isinstance(returnVal, dict):
raise ValueError('Method get_cds_by_gene return value ' +
'returnVal is not type dict as required.')
# return the results
return [returnVal]