本文整理汇总了Python中dark.titles.TitleAlignments.coverageCounts方法的典型用法代码示例。如果您正苦于以下问题：Python TitleAlignments.coverageCounts方法的具体用法？Python TitleAlignments.coverageCounts怎么用？Python TitleAlignments.coverageCounts使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类dark.titles.TitleAlignments的用法示例。
在下文中一共展示了TitleAlignments.coverageCounts方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: testFullCoverageCounts
# 需要导入模块: from dark.titles import TitleAlignments [as 别名]
# 或者: from dark.titles.TitleAlignments import coverageCounts [as 别名]
def testFullCoverageCounts(self):
"""
The coverageCounts method must return the correct result when the title
is fully covered by its reads.
"""
hsp1 = HSP(7, subjectStart=0, subjectEnd=5)
hsp2 = HSP(8, subjectStart=5, subjectEnd=10)
titleAlignments = TitleAlignments('subject title', 10)
read = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
c = Counter([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])
self.assertEqual(c, titleAlignments.coverageCounts())示例2: testCoverageCountsOverlap
# 需要导入模块: from dark.titles import TitleAlignments [as 别名]
# 或者: from dark.titles.TitleAlignments import coverageCounts [as 别名]
def testCoverageCountsOverlap(self):
"""
The coverageCounts method must return the correct results when the
title is partially covered by its reads that overlap.
"""
hsp1 = HSP(7, subjectStart=1, subjectEnd=2)
hsp2 = HSP(15, subjectStart=3, subjectEnd=6)
hsp3 = HSP(21, subjectStart=5, subjectEnd=6)
titleAlignments = TitleAlignments('subject title', 10)
read = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
read = Read('id2', 'AAA')
titleAlignment = TitleAlignment(read, [hsp3])
titleAlignments.addAlignment(titleAlignment)
c = Counter([1, 3, 4, 5, 5])
self.assertEqual(c, titleAlignments.coverageCounts())