本文整理汇总了Python中dark.titles.TitleAlignments.coverage方法的典型用法代码示例。如果您正苦于以下问题：Python TitleAlignments.coverage方法的具体用法？Python TitleAlignments.coverage怎么用？Python TitleAlignments.coverage使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类dark.titles.TitleAlignments的用法示例。
在下文中一共展示了TitleAlignments.coverage方法的3个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: testCoverageNoReads
# 需要导入模块: from dark.titles import TitleAlignments [as 别名]
# 或者: from dark.titles.TitleAlignments import coverage [as 别名]
def testCoverageNoReads(self):
"""
The coverage method must return zero when a title alignments has no
alignments (and therefore no coverage).
"""
titleAlignments = TitleAlignments('subject title', 100)
self.assertEqual(0.0, titleAlignments.coverage())示例2: testFullCoverage
# 需要导入模块: from dark.titles import TitleAlignments [as 别名]
# 或者: from dark.titles.TitleAlignments import coverage [as 别名]
def testFullCoverage(self):
"""
The coverage method must return the correct value when the title is
fully covered by its reads.
"""
hsp1 = HSP(7, subjectStart=0, subjectEnd=50)
hsp2 = HSP(8, subjectStart=50, subjectEnd=100)
titleAlignments = TitleAlignments('subject title', 100)
read = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual(1.0, titleAlignments.coverage())示例3: testPartialCoverage
# 需要导入模块: from dark.titles import TitleAlignments [as 别名]
# 或者: from dark.titles.TitleAlignments import coverage [as 别名]
def testPartialCoverage(self):
"""
The coverage method must return the correct value when the title is
partially covered by its reads.
"""
hsp1 = HSP(7, subjectStart=10, subjectEnd=20)
hsp2 = HSP(15, subjectStart=30, subjectEnd=40)
hsp3 = HSP(21, subjectStart=50, subjectEnd=60)
titleAlignments = TitleAlignments('subject title', 100)
read = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
read = Read('id2', 'AAA')
titleAlignment = TitleAlignment(read, [hsp3])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual(0.3, titleAlignments.coverage())