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Python MinHash.merge方法代码示例

本文整理汇总了Python中sourmash._minhash.MinHash.merge方法的典型用法代码示例。如果您正苦于以下问题:Python MinHash.merge方法的具体用法?Python MinHash.merge怎么用?Python MinHash.merge使用的例子?那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在sourmash._minhash.MinHash的用法示例。


在下文中一共展示了MinHash.merge方法的7个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Python代码示例。

示例1: test_mh_asymmetric_merge

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import merge [as 别名]
def test_mh_asymmetric_merge(track_abundance):
    # test merging two asymmetric (different size) MHs
    a = MinHash(20, 10, track_abundance=track_abundance)
    for i in range(0, 40, 2):
        a.add_hash(i)

    # different size: 10
    b = MinHash(10, 10, track_abundance=track_abundance)
    for i in range(0, 80, 4):
        b.add_hash(i)

    c = a.merge(b)
    d = b.merge(a)

    assert len(a) == 20
    assert len(b) == 10
    assert len(c) == len(a)
    assert len(d) == len(b)

    # can't compare different sizes without downsampling
    with pytest.raises(TypeError):
        d.compare(a)

    a = a.downsample_n(d.num)
    print(a.get_mins())
    print(d.get_mins())
    assert d.compare(a) == 1.0

    c = c.downsample_n(b.num)
    assert c.compare(b) == 1.0
开发者ID:dib-lab,项目名称:sourmash,代码行数:32,代码来源:test__minhash.py

示例2: test_minhash_abund_merge_flat_2

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import merge [as 别名]
def test_minhash_abund_merge_flat_2():
    # this targets a segfault caused by trying to merge
    # a signature with abundance and a signature without abundance.

    a = MinHash(0, 10, track_abundance=True, max_hash=5000)
    b = MinHash(0, 10, max_hash=5000)

    for i in range(0, 10, 2):
        a.add_hash(i)

    for j in range(0, 10, 3):
        b.add_hash(i)

    a.merge(b)
开发者ID:dib-lab,项目名称:sourmash,代码行数:16,代码来源:test__minhash.py

示例3: test_mh_merge

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import merge [as 别名]
def test_mh_merge(track_abundance):
    # test merging two identically configured minhashes
    a = MinHash(20, 10, track_abundance=track_abundance)
    for i in range(0, 40, 2):
        a.add_hash(i)

    b = MinHash(20, 10, track_abundance=track_abundance)
    for i in range(0, 80, 4):
        b.add_hash(i)

    c = a.merge(b)
    d = b.merge(a)

    assert len(c) == len(d)
    assert c.get_mins() == d.get_mins()
    assert c.compare(d) == 1.0
    assert d.compare(c) == 1.0
开发者ID:dib-lab,项目名称:sourmash,代码行数:19,代码来源:test__minhash.py

示例4: test_mh_merge_check_length

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import merge [as 别名]
def test_mh_merge_check_length(track_abundance):
    a = MinHash(20, 10, track_abundance=track_abundance)
    for i in range(0, 40, 2):
        a.add_hash(i)

    b = MinHash(20, 10, track_abundance=track_abundance)
    for i in range(0, 80, 4):
        b.add_hash(i)

    c = a.merge(b)
    assert(len(c.get_mins()) == 20)
开发者ID:dib-lab,项目名称:sourmash,代码行数:13,代码来源:test__minhash.py

示例5: test_mh_merge_check_length2

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import merge [as 别名]
def test_mh_merge_check_length2(track_abundance):
    # merged MH doesn't have full number of elements
    a = MinHash(4, 10, track_abundance=track_abundance)
    a.add_hash(3)
    a.add_hash(1)
    a.add_hash(4)

    b = MinHash(4, 10, track_abundance=track_abundance)
    b.add_hash(3)
    b.add_hash(1)
    b.add_hash(4)

    c = a.merge(b)
    assert(len(c.get_mins()) == 3)
开发者ID:dib-lab,项目名称:sourmash,代码行数:16,代码来源:test__minhash.py

示例6: test_mh_merge_diff_ksize

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import merge [as 别名]
def test_mh_merge_diff_ksize(track_abundance):
    a = MinHash(20, 5, track_abundance=track_abundance)
    b = MinHash(20, 6, track_abundance=track_abundance)

    with pytest.raises(ValueError):
        a.merge(b)
开发者ID:dib-lab,项目名称:sourmash,代码行数:8,代码来源:test__minhash.py

示例7: test_mh_merge_diff_protein

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import merge [as 别名]
def test_mh_merge_diff_protein(track_abundance):
    a = MinHash(20, 5, False, track_abundance=track_abundance)
    b = MinHash(20, 5, True, track_abundance=track_abundance)

    with pytest.raises(ValueError):
        a.merge(b)
开发者ID:dib-lab,项目名称:sourmash,代码行数:8,代码来源:test__minhash.py


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