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Python MinHash.count_common方法代码示例

本文整理汇总了Python中sourmash._minhash.MinHash.count_common方法的典型用法代码示例。如果您正苦于以下问题:Python MinHash.count_common方法的具体用法?Python MinHash.count_common怎么用?Python MinHash.count_common使用的例子?那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在sourmash._minhash.MinHash的用法示例。


在下文中一共展示了MinHash.count_common方法的7个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Python代码示例。

示例1: test_mh_count_common

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import count_common [as 别名]
def test_mh_count_common(track_abundance):
    a = MinHash(20, 10, track_abundance=track_abundance)
    for i in range(0, 40, 2):
        a.add_hash(i)

    b = MinHash(20, 10, track_abundance=track_abundance)
    for i in range(0, 80, 4):
        b.add_hash(i)

    assert a.count_common(b) == 10
    assert b.count_common(a) == 10
开发者ID:dib-lab,项目名称:sourmash,代码行数:13,代码来源:test__minhash.py

示例2: test_abundance_count_common

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import count_common [as 别名]
def test_abundance_count_common():
    a = MinHash(20, 5, False, track_abundance=True)
    b = MinHash(20, 5, False, track_abundance=False)

    a.add_sequence('AAAAA')
    a.add_sequence('AAAAA')
    assert a.get_mins() == [2110480117637990133]
    assert a.get_mins(with_abundance=True) == {2110480117637990133: 2}

    b.add_sequence('AAAAA')
    b.add_sequence('GGGGG')
    assert a.count_common(b) == 1
    assert a.count_common(b) == b.count_common(a)

    assert b.get_mins(with_abundance=True) == [2110480117637990133,
                                               10798773792509008305]
开发者ID:dib-lab,项目名称:sourmash,代码行数:18,代码来源:test__minhash.py

示例3: test_mh_asymmetric

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import count_common [as 别名]
def test_mh_asymmetric(track_abundance):
    a = MinHash(20, 10, track_abundance=track_abundance)
    for i in range(0, 40, 2):
        a.add_hash(i)

    # different size: 10
    b = MinHash(10, 10, track_abundance=track_abundance)
    for i in range(0, 80, 4):
        b.add_hash(i)

    assert a.count_common(b) == 10
    assert b.count_common(a) == 10

    with pytest.raises(TypeError):
        a.compare(b)

    a = a.downsample_n(10)
    assert a.compare(b) == 0.5
    assert b.compare(a) == 0.5
开发者ID:dib-lab,项目名称:sourmash,代码行数:21,代码来源:test__minhash.py

示例4: test_abundance_simple_2

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import count_common [as 别名]
def test_abundance_simple_2():
    a = MinHash(20, 5, False, track_abundance=True)
    b = MinHash(20, 5, False, track_abundance=True)

    a.add_sequence('AAAAA')
    assert a.get_mins() == [2110480117637990133]
    assert a.get_mins(with_abundance=True) == {2110480117637990133: 1}

    a.add_sequence('AAAAA')
    assert a.get_mins() == [2110480117637990133]
    assert a.get_mins(with_abundance=True) == {2110480117637990133: 2}

    b.add_sequence('AAAAA')
    assert a.count_common(b) == 1
开发者ID:dib-lab,项目名称:sourmash,代码行数:16,代码来源:test__minhash.py

示例5: test_mh_count_common_diff_ksize

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import count_common [as 别名]
def test_mh_count_common_diff_ksize(track_abundance):
    a = MinHash(20, 5, track_abundance=track_abundance)
    b = MinHash(20, 6, track_abundance=track_abundance)

    with pytest.raises(ValueError):
        a.count_common(b)
开发者ID:dib-lab,项目名称:sourmash,代码行数:8,代码来源:test__minhash.py

示例6: test_mh_count_common_diff_seed

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import count_common [as 别名]
def test_mh_count_common_diff_seed(track_abundance):
    a = MinHash(20, 5, False, track_abundance=track_abundance, seed=1)
    b = MinHash(20, 5, True, track_abundance=track_abundance, seed=2)

    with pytest.raises(ValueError):
        a.count_common(b)
开发者ID:dib-lab,项目名称:sourmash,代码行数:8,代码来源:test__minhash.py

示例7: test_mh_count_common_diff_maxhash

# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import count_common [as 别名]
def test_mh_count_common_diff_maxhash(track_abundance):
    a = MinHash(0, 5, False, track_abundance=track_abundance, max_hash=1)
    b = MinHash(0, 5, True, track_abundance=track_abundance, max_hash=2)

    with pytest.raises(ValueError):
        a.count_common(b)
开发者ID:dib-lab,项目名称:sourmash,代码行数:8,代码来源:test__minhash.py


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