本文整理汇总了Python中sourmash._minhash.MinHash.compare方法的典型用法代码示例。如果您正苦于以下问题：Python MinHash.compare方法的具体用法？Python MinHash.compare怎么用？Python MinHash.compare使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类sourmash._minhash.MinHash的用法示例。
在下文中一共展示了MinHash.compare方法的7个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_abundance_compare
# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import compare [as 别名]
def test_abundance_compare():
a = MinHash(20, 10, track_abundance=True)
b = MinHash(20, 10, track_abundance=False)
a.add_sequence('TGCCGCCCAGCACCGGGTGACTAGGTTGAGCCATGATTAACCTGCAATGA')
b.add_sequence('TGCCGCCCAGCACCGGGTGACTAGGTTGAGCCATGATTAACCTGCAATGA')
assert a.compare(b) == 1.0
assert b.compare(b) == 1.0
assert b.compare(a) == 1.0
assert a.compare(a) == 1.0
# add same sequence again
b.add_sequence('TGCCGCCCAGCACCGGGTGACTAGGTTGAGCCATGATTAACCTGCAATGA')
assert a.compare(b) == 1.0
assert b.compare(b) == 1.0
assert b.compare(a) == 1.0
assert a.compare(a) == 1.0
b.add_sequence('GATTGGTGCACACTTAACTGGGTGCCGCGCTGGTGCTGATCCATGAAGTT')
x = a.compare(b)
assert x >= 0.3, x
x = b.compare(a)
assert x >= 0.3, x
assert a.compare(a) == 1.0
assert b.compare(b) == 1.0示例2: test_consume_lowercase
# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import compare [as 别名]
def test_consume_lowercase(track_abundance):
a = MinHash(20, 10, track_abundance=track_abundance)
b = MinHash(20, 10, track_abundance=track_abundance)
a.add_sequence('TGCCGCCCAGCACCGGGTGACTAGGTTGAGCCATGATTAACCTGCAATGA'.lower())
b.add_sequence('TGCCGCCCAGCACCGGGTGACTAGGTTGAGCCATGATTAACCTGCAATGA')
assert a.compare(b) == 1.0
assert b.compare(b) == 1.0
assert b.compare(a) == 1.0
assert a.compare(a) == 1.0示例3: test_mh_asymmetric
# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import compare [as 别名]
def test_mh_asymmetric(track_abundance):
a = MinHash(20, 10, track_abundance=track_abundance)
for i in range(0, 40, 2):
a.add_hash(i)
# different size: 10
b = MinHash(10, 10, track_abundance=track_abundance)
for i in range(0, 80, 4):
b.add_hash(i)
assert a.count_common(b) == 10
assert b.count_common(a) == 10
with pytest.raises(TypeError):
a.compare(b)
a = a.downsample_n(10)
assert a.compare(b) == 0.5
assert b.compare(a) == 0.5示例4: test_mh_compare_diff_max_hash
# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import compare [as 别名]
def test_mh_compare_diff_max_hash(track_abundance):
a = MinHash(0, 5, track_abundance=track_abundance, max_hash=5)
b = MinHash(0, 5, track_abundance=track_abundance, max_hash=10)
with pytest.raises(ValueError):
a.compare(b)示例5: test_mh_compare_diff_seed
# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import compare [as 别名]
def test_mh_compare_diff_seed(track_abundance):
a = MinHash(20, 5, track_abundance=track_abundance, seed=1)
b = MinHash(20, 5, track_abundance=track_abundance, seed=2)
with pytest.raises(ValueError):
a.compare(b)示例6: test_mh_compare_diff_ksize
# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import compare [as 别名]
def test_mh_compare_diff_ksize(track_abundance):
a = MinHash(20, 5, track_abundance=track_abundance)
b = MinHash(20, 6, track_abundance=track_abundance)
with pytest.raises(ValueError):
a.compare(b)示例7: test_mh_compare_diff_protein
# 需要导入模块: from sourmash._minhash import MinHash [as 别名]
# 或者: from sourmash._minhash.MinHash import compare [as 别名]
def test_mh_compare_diff_protein(track_abundance):
a = MinHash(20, 5, False, track_abundance=track_abundance)
b = MinHash(20, 5, True, track_abundance=track_abundance)
with pytest.raises(ValueError):
a.compare(b)