本文整理汇总了Python中qiita_ware.ebi.EBISubmission.write_experiment_xml方法的典型用法代码示例。如果您正苦于以下问题：Python EBISubmission.write_experiment_xml方法的具体用法？Python EBISubmission.write_experiment_xml怎么用？Python EBISubmission.write_experiment_xml使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类qiita_ware.ebi.EBISubmission的用法示例。
在下文中一共展示了EBISubmission.write_experiment_xml方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_write_experiment_xml
# 需要导入模块: from qiita_ware.ebi import EBISubmission [as 别名]
# 或者: from qiita_ware.ebi.EBISubmission import write_experiment_xml [as 别名]
def test_write_experiment_xml(self):
submission = EBISubmission('001', 'teststudy', 'test asbstract',
'metagenome')
submission.add_sample('test1')
submission.add_sample_prep('test1', 'ILLUMINA', 'fastq',
'fakepath', 'experiment description',
'library protocol')
fh, output = mkstemp()
close(fh)
submission.write_experiment_xml(output)
obs_stripped = ''.join([l.strip() for l in open(output)])
exp_stripped = ''.join([l.strip() for l in EXPERIMENTXML.splitlines()])
self.assertEqual(obs_stripped, exp_stripped)
remove(output)示例2: test_write_experiment_xml
# 需要导入模块: from qiita_ware.ebi import EBISubmission [as 别名]
# 或者: from qiita_ware.ebi.EBISubmission import write_experiment_xml [as 别名]
def test_write_experiment_xml(self):
submission = EBISubmission('001', 'teststudy', 'test asbstract',
investigation_type='Other',
new_investigation_type='metagenome')
submission.add_sample('test1', '9606', 'homo sapiens', 'desc1')
submission.add_sample_prep('test1', 'ILLUMINA', 'fastq',
self.sample1_fp, 'experiment description',
'library protocol')
fh, output = mkstemp()
close(fh)
submission.write_experiment_xml(output)
obs_stripped = ''.join([l.strip() for l in open(output)])
exp = EXPERIMENTXML % {
'path': self.sample1_fp,
'organization_prefix': qiita_config.ebi_organization_prefix}
exp_stripped = ''.join([l.strip() for l in exp.splitlines()])
self.assertEqual(obs_stripped, exp_stripped)
remove(output)