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Python EBISubmission.write_experiment_xml方法代码示例

本文整理汇总了Python中qiita_ware.ebi.EBISubmission.write_experiment_xml方法的典型用法代码示例。如果您正苦于以下问题:Python EBISubmission.write_experiment_xml方法的具体用法?Python EBISubmission.write_experiment_xml怎么用?Python EBISubmission.write_experiment_xml使用的例子?那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在qiita_ware.ebi.EBISubmission的用法示例。


在下文中一共展示了EBISubmission.write_experiment_xml方法的2个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Python代码示例。

示例1: test_write_experiment_xml

# 需要导入模块: from qiita_ware.ebi import EBISubmission [as 别名]
# 或者: from qiita_ware.ebi.EBISubmission import write_experiment_xml [as 别名]
 def test_write_experiment_xml(self):
     submission = EBISubmission('001', 'teststudy', 'test asbstract',
                                'metagenome')
     submission.add_sample('test1')
     submission.add_sample_prep('test1', 'ILLUMINA', 'fastq',
                                'fakepath', 'experiment description',
                                'library protocol')
     fh, output = mkstemp()
     close(fh)
     submission.write_experiment_xml(output)
     obs_stripped = ''.join([l.strip() for l in open(output)])
     exp_stripped = ''.join([l.strip() for l in EXPERIMENTXML.splitlines()])
     self.assertEqual(obs_stripped, exp_stripped)
     remove(output)
开发者ID:Jorge-C,项目名称:qiita,代码行数:16,代码来源:test_ebi.py

示例2: test_write_experiment_xml

# 需要导入模块: from qiita_ware.ebi import EBISubmission [as 别名]
# 或者: from qiita_ware.ebi.EBISubmission import write_experiment_xml [as 别名]
 def test_write_experiment_xml(self):
     submission = EBISubmission('001', 'teststudy', 'test asbstract',
                                investigation_type='Other',
                                new_investigation_type='metagenome')
     submission.add_sample('test1', '9606', 'homo sapiens', 'desc1')
     submission.add_sample_prep('test1', 'ILLUMINA', 'fastq',
                                self.sample1_fp, 'experiment description',
                                'library protocol')
     fh, output = mkstemp()
     close(fh)
     submission.write_experiment_xml(output)
     obs_stripped = ''.join([l.strip() for l in open(output)])
     exp = EXPERIMENTXML % {
         'path': self.sample1_fp,
         'organization_prefix': qiita_config.ebi_organization_prefix}
     exp_stripped = ''.join([l.strip() for l in exp.splitlines()])
     self.assertEqual(obs_stripped, exp_stripped)
     remove(output)
开发者ID:MarkBruns,项目名称:qiita,代码行数:20,代码来源:test_ebi.py


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