本文整理汇总了Python中qiita_ware.ebi.EBISubmission._get_study_alias方法的典型用法代码示例。如果您正苦于以下问题：Python EBISubmission._get_study_alias方法的具体用法？Python EBISubmission._get_study_alias怎么用？Python EBISubmission._get_study_alias使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类qiita_ware.ebi.EBISubmission的用法示例。
在下文中一共展示了EBISubmission._get_study_alias方法的3个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_generate_run_xml
# 需要导入模块: from qiita_ware.ebi import EBISubmission [as 别名]
# 或者: from qiita_ware.ebi.EBISubmission import _get_study_alias [as 别名]
def test_generate_run_xml(self):
submission = EBISubmission('001', 'teststudy', 'test asbstract',
investigation_type='Other',
new_investigation_type='metagenome')
submission.add_sample('test1', '9606', 'homo sapiens', 'desc1')
submission.add_sample_prep('test1', 'ILLUMINA', 'fastq',
self.sample1_fp,
'experiment description',
'library protocol')
xmlelement = submission.generate_run_xml()
xml = minidom.parseString(ET.tostring(xmlelement))
# insert the proper EBI directory, since it is a timestamp and hard
# to predict
RUNXML_mod = RUNXML % {
'study_alias': submission._get_study_alias(),
'ebi_dir': submission.ebi_dir,
'organization_prefix': qiita_config.ebi_organization_prefix}
xmlstring = xml.toprettyxml(indent=' ', encoding='UTF-8')
obs_stripped = ''.join([l.strip() for l in xmlstring.splitlines()])
exp_stripped = ''.join([l.strip() for l in RUNXML_mod.splitlines()])
self.assertEqual(obs_stripped, exp_stripped)示例2: test_get_study_alias
# 需要导入模块: from qiita_ware.ebi import EBISubmission [as 别名]
# 或者: from qiita_ware.ebi.EBISubmission import _get_study_alias [as 别名]
def test_get_study_alias(self):
e = EBISubmission('2', 'Study Title', 'Study Abstract', 'metagenome')
self.assertEqual(e._get_study_alias(), 'qiime_study_2')示例3: test_get_study_alias
# 需要导入模块: from qiita_ware.ebi import EBISubmission [as 别名]
# 或者: from qiita_ware.ebi.EBISubmission import _get_study_alias [as 别名]
def test_get_study_alias(self):
e = EBISubmission('2', 'Study Title', 'Study Abstract',
investigation_type='Other',
new_investigation_type='metagenome')
exp = '%s_ppdid_2' % qiita_config.ebi_organization_prefix
self.assertEqual(e._get_study_alias(), exp)