本文整理汇总了Python中qiita_ware.ebi.EBISubmission.add_samples_from_templates方法的典型用法代码示例。如果您正苦于以下问题：Python EBISubmission.add_samples_from_templates方法的具体用法？Python EBISubmission.add_samples_from_templates怎么用？Python EBISubmission.add_samples_from_templates使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类qiita_ware.ebi.EBISubmission的用法示例。
在下文中一共展示了EBISubmission.add_samples_from_templates方法的3个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_add_samples_from_templates_bad_directory
# 需要导入模块: from qiita_ware.ebi import EBISubmission [as 别名]
# 或者: from qiita_ware.ebi.EBISubmission import add_samples_from_templates [as 别名]
def test_add_samples_from_templates_bad_directory(self):
sample_template = StringIO(EXP_SAMPLE_TEMPLATE)
prep_template = StringIO(EXP_PREP_TEMPLATE)
submission = EBISubmission('001', 'teststudy', 'test asbstract',
'metagenome')
with self.assertRaises(IOError):
submission.add_samples_from_templates(
sample_template, [prep_template],
self.path+'WILL-NOT-EXIST-BOOM')示例2: test_add_samples_from_templates
# 需要导入模块: from qiita_ware.ebi import EBISubmission [as 别名]
# 或者: from qiita_ware.ebi.EBISubmission import add_samples_from_templates [as 别名]
def test_add_samples_from_templates(self):
sample_template = StringIO(EXP_SAMPLE_TEMPLATE)
prep_template = StringIO(EXP_PREP_TEMPLATE)
submission = EBISubmission('001', 'teststudy', 'test asbstract',
'metagenome')
submission.add_samples_from_templates(sample_template, prep_template,
self.path)
self.assertTrue('sample1' in submission.samples)
self.assertTrue('sample2' in submission.samples)
self.assertTrue('sample3' in submission.samples)
self.assertEqual(submission.samples['sample2']['preps'][0]['platform'],
'ILLUMINA')
self.assertEqual(
submission.samples['sample2']['preps'][0]['file_path'],
self.path + '/sample2.fastq.gz')
with self.assertRaises(KeyError):
submission.samples['nothere']示例3: test_add_samples_from_templates_filter_samples
# 需要导入模块: from qiita_ware.ebi import EBISubmission [as 别名]
# 或者: from qiita_ware.ebi.EBISubmission import add_samples_from_templates [as 别名]
def test_add_samples_from_templates_filter_samples(self):
sample_template = StringIO(EXP_SAMPLE_TEMPLATE)
prep_template = StringIO(EXP_PREP_TEMPLATE_FILTERED)
submission = EBISubmission('001', 'teststudy', 'test asbstract',
investigation_type='Other',
new_investigation_type='metagenome')
submission.add_samples_from_templates(sample_template, prep_template,
self.path)
self.assertTrue('sample1' in submission.samples)
self.assertTrue('sample2' in submission.samples)
self.assertFalse('sample3' in submission.samples)
self.assertEqual(submission.samples['sample2']['prep']['platform'],
'ILLUMINA')
self.assertEqual(
submission.samples['sample2']['prep']['file_path'],
self.sample2_fp)
with self.assertRaises(KeyError):
submission.samples['nothere']