本文整理汇总了Python中qiita_ware.ebi.EBISubmission.generate_study_xml方法的典型用法代码示例。如果您正苦于以下问题：Python EBISubmission.generate_study_xml方法的具体用法？Python EBISubmission.generate_study_xml怎么用？Python EBISubmission.generate_study_xml使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类qiita_ware.ebi.EBISubmission的用法示例。
在下文中一共展示了EBISubmission.generate_study_xml方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_generate_study_xml
# 需要导入模块: from qiita_ware.ebi import EBISubmission [as 别名]
# 或者: from qiita_ware.ebi.EBISubmission import generate_study_xml [as 别名]
def test_generate_study_xml(self):
submission = EBISubmission('001', 'teststudy', 'test asbstract',
'metagenome')
xmlelement = submission.generate_study_xml()
xml = minidom.parseString(ET.tostring(xmlelement))
xmlstring = xml.toprettyxml(indent=' ', encoding='UTF-8')
obs_stripped = ''.join([l.strip() for l in xmlstring.splitlines()])
exp_stripped = ''.join([l.strip() for l in STUDYXML.splitlines()])
self.assertEqual(obs_stripped, exp_stripped)示例2: test_generate_study_xml
# 需要导入模块: from qiita_ware.ebi import EBISubmission [as 别名]
# 或者: from qiita_ware.ebi.EBISubmission import generate_study_xml [as 别名]
def test_generate_study_xml(self):
submission = EBISubmission('001', 'teststudy', 'test asbstract',
investigation_type='Other',
new_investigation_type='metagenome')
xmlelement = submission.generate_study_xml()
xml = minidom.parseString(ET.tostring(xmlelement))
xmlstring = xml.toprettyxml(indent=' ', encoding='UTF-8')
obs_stripped = ''.join([l.strip() for l in xmlstring.splitlines()])
exp_stripped = ''.join([l.strip() for l in STUDYXML.splitlines()])
self.assertEqual(obs_stripped, exp_stripped)
submission_pmids = \
EBISubmission('001', 'teststudy', 'test asbstract', 'Other',
new_investigation_type='Amplicon Sequencing',
pmids=[12, 15])
xmlelement = submission_pmids.generate_study_xml()
xml = minidom.parseString(ET.tostring(xmlelement))
xmlstring = xml.toprettyxml(indent=' ', encoding='UTF-8')
obs_stripped = ''.join([l.strip() for l in xmlstring.splitlines()])
exp_stripped = ''.join([l.strip() for l in
STUDYXML_PMIDS.splitlines()])
self.assertEqual(obs_stripped, exp_stripped)