Python Raw.load_bad_channels方法代码示例

# 需要导入模块: from mne.fiff import Raw [as 别名]
# 或者: from mne.fiff.Raw import load_bad_channels [as 别名]
def test_compute_proj_raw():
    """Test SSP computation on raw"""
    # Test that the raw projectors work
    raw_time = 2.5  # Do shorter amount for speed
    raw = Raw(raw_fname, preload=True).crop(0, raw_time, False)
    for ii in (0.25, 0.5, 1, 2):
        with warnings.catch_warnings(True) as w:
            projs = compute_proj_raw(raw, duration=ii - 0.1, stop=raw_time,
                                     n_grad=1, n_mag=1, n_eeg=0)
            assert_true(len(w) == 1)

        # test that you can compute the projection matrix
        projs = activate_proj(projs)
        proj, nproj, U = make_projector(projs, raw.ch_names, bads=[])

        assert_true(nproj == 2)
        assert_true(U.shape[1] == 2)

        # test that you can save them
        raw.info['projs'] += projs
        raw.save(op.join(tempdir, 'foo_%d_raw.fif' % ii), overwrite=True)

    # Test that purely continuous (no duration) raw projection works
    with warnings.catch_warnings(True) as w:
        projs = compute_proj_raw(raw, duration=None, stop=raw_time,
                                 n_grad=1, n_mag=1, n_eeg=0)
        assert_true(len(w) == 1)

    # test that you can compute the projection matrix
    projs = activate_proj(projs)
    proj, nproj, U = make_projector(projs, raw.ch_names, bads=[])

    assert_true(nproj == 2)
    assert_true(U.shape[1] == 2)

    # test that you can save them
    raw.info['projs'] += projs
    raw.save(op.join(tempdir, 'foo_rawproj_continuous_raw.fif'))

    # test resampled-data projector, upsampling instead of downsampling
    # here to save an extra filtering (raw would have to be LP'ed to be equiv)
    raw_resamp = cp.deepcopy(raw)
    raw_resamp.resample(raw.info['sfreq'] * 2, n_jobs=2)
    with warnings.catch_warnings(True) as w:
        projs = compute_proj_raw(raw_resamp, duration=None, stop=raw_time,
                                 n_grad=1, n_mag=1, n_eeg=0)
    projs = activate_proj(projs)
    proj_new, _, _ = make_projector(projs, raw.ch_names, bads=[])
    assert_array_almost_equal(proj_new, proj, 4)

    # test with bads
    raw.load_bad_channels(bads_fname)  # adds 2 bad mag channels
    with warnings.catch_warnings(True) as w:
        projs = compute_proj_raw(raw, n_grad=0, n_mag=0, n_eeg=1)

    # test that bad channels can be excluded
    proj, nproj, U = make_projector(projs, raw.ch_names,
                                    bads=raw.ch_names)
    assert_array_almost_equal(proj, np.eye(len(raw.ch_names)))

# 需要导入模块: from mne.fiff import Raw [as 别名]
# 或者: from mne.fiff.Raw import load_bad_channels [as 别名]
def test_load_bad_channels():
    """Test reading/writing of bad channels
    """
    # Load correctly marked file (manually done in mne_process_raw)
    raw_marked = Raw(fif_bad_marked_fname)
    correct_bads = raw_marked.info['bads']
    raw = Raw(fif_fname)
    # Make sure it starts clean
    assert_array_equal(raw.info['bads'], [])

    # Test normal case
    raw.load_bad_channels(bad_file_works)
    # Write it out, read it in, and check
    raw.save(op.join(tempdir, 'foo_raw.fif'))
    raw_new = Raw(op.join(tempdir, 'foo_raw.fif'))
    assert_equal(correct_bads, raw_new.info['bads'])
    # Reset it
    raw.info['bads'] = []

    # Test bad case
    assert_raises(ValueError, raw.load_bad_channels, bad_file_wrong)

    # Test forcing the bad case
    with warnings.catch_warnings(record=True) as w:
        warnings.simplefilter('always')
        raw.load_bad_channels(bad_file_wrong, force=True)
        n_found = sum(['1 bad channel' in str(ww.message) for ww in w])
        assert_equal(n_found, 1)  # there could be other irrelevant errors
        # write it out, read it in, and check
        raw.save(op.join(tempdir, 'foo_raw.fif'), overwrite=True)
        raw_new = Raw(op.join(tempdir, 'foo_raw.fif'))
        assert_equal(correct_bads, raw_new.info['bads'])

    # Check that bad channels are cleared
    raw.load_bad_channels(None)
    raw.save(op.join(tempdir, 'foo_raw.fif'), overwrite=True)
    raw_new = Raw(op.join(tempdir, 'foo_raw.fif'))
    assert_equal([], raw_new.info['bads'])

# 需要导入模块: from mne.fiff import Raw [as 别名]
# 或者: from mne.fiff.Raw import load_bad_channels [as 别名]
def test_load_bad_channels():
    """Test reading/writing of bad channels
    """

    # Load correctly marked file (manually done in mne_process_raw)
    raw_marked = Raw(fif_bad_marked_fname)
    correct_bads = raw_marked.info['bads']
    raw = Raw(fif_fname)
    # Make sure it starts clean
    assert_array_equal(raw.info['bads'], [])

    # Test normal case
    raw.load_bad_channels(bad_file_works)
    # Write it out, read it in, and check
    raw.save(op.join(tempdir, 'foo_raw.fif'))
    raw_new = Raw(op.join(tempdir, 'foo_raw.fif'))
    assert_equal(correct_bads, raw_new.info['bads'])
    # Reset it
    raw.info['bads'] = []

    # Test bad case
    assert_raises(ValueError, raw.load_bad_channels, bad_file_wrong)

    # Test forcing the bad case
    with warnings.catch_warnings(record=True) as w:
        raw.load_bad_channels(bad_file_wrong, force=True)
        assert_equal(len(w), 1)
        # write it out, read it in, and check
        raw.save(op.join(tempdir, 'foo_raw.fif'))
        raw_new = Raw(op.join(tempdir, 'foo_raw.fif'))
        assert_equal(correct_bads, raw_new.info['bads'])

    # Check that bad channels are cleared
    raw.load_bad_channels(None)
    raw.save(op.join(tempdir, 'foo_raw.fif'))
    raw_new = Raw(op.join(tempdir, 'foo_raw.fif'))
    assert_equal([], raw_new.info['bads'])