本文整理汇总了Python中Bio.Phylo.Consensus.majority_consensus方法的典型用法代码示例。如果您正苦于以下问题：Python Consensus.majority_consensus方法的具体用法？Python Consensus.majority_consensus怎么用？Python Consensus.majority_consensus使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Bio.Phylo.Consensus的用法示例。
在下文中一共展示了Consensus.majority_consensus方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_majority_consensus
# 需要导入模块: from Bio.Phylo import Consensus [as 别名]
# 或者: from Bio.Phylo.Consensus import majority_consensus [as 别名]
def test_majority_consensus(self):
ref_trees = Phylo.parse('./TreeConstruction/majority_ref.tre', 'newick')
ref_tree = next(ref_trees)
consensus_tree = Consensus.majority_consensus(self.trees)
self.assertTrue(Consensus._equal_topology(consensus_tree, ref_tree))
ref_tree = next(ref_trees)
consensus_tree = Consensus.majority_consensus(self.trees, 1)
self.assertTrue(Consensus._equal_topology(consensus_tree, ref_tree))示例2: test_majority_consensus
# 需要导入模块: from Bio.Phylo import Consensus [as 别名]
# 或者: from Bio.Phylo.Consensus import majority_consensus [as 别名]
def test_majority_consensus(self):
# three trees
# ref_tree = open('./TreeConstruction/majority_ref.tre')
ref_tree = list(Phylo.parse("./TreeConstruction/majority_ref.tre", "newick"))
consensus_tree = Consensus.majority_consensus(self.trees)
# tree_file = StringIO()
# Phylo.write(consensus_tree, tree_file, 'newick')
self.assertTrue(Consensus._equal_topology(consensus_tree, ref_tree[0]))
consensus_tree = Consensus.majority_consensus(self.trees, 1)
# tree_file = StringIO()
# Phylo.write(consensus_tree, tree_file, 'newick')
self.assertTrue(Consensus._equal_topology(consensus_tree, ref_tree[1]))