本文整理汇总了Python中Bio.Phylo.Consensus.bootstrap_consensus方法的典型用法代码示例。如果您正苦于以下问题：Python Consensus.bootstrap_consensus方法的具体用法？Python Consensus.bootstrap_consensus怎么用？Python Consensus.bootstrap_consensus使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Bio.Phylo.Consensus的用法示例。
在下文中一共展示了Consensus.bootstrap_consensus方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_bootstrap_consensus
# 需要导入模块: from Bio.Phylo import Consensus [as 别名]
# 或者: from Bio.Phylo.Consensus import bootstrap_consensus [as 别名]
def test_bootstrap_consensus(self):
calculator = DistanceCalculator('blosum62')
constructor = DistanceTreeConstructor(calculator, 'nj')
tree = Consensus.bootstrap_consensus(self.msa, 100, constructor, Consensus.majority_consensus)
self.assertTrue(isinstance(tree, BaseTree.Tree))
Phylo.write(tree, os.path.join(temp_dir, 'bootstrap_consensus.tre'), 'newick')示例2: test_bootstrap_consensus
# 需要导入模块: from Bio.Phylo import Consensus [as 别名]
# 或者: from Bio.Phylo.Consensus import bootstrap_consensus [as 别名]
def test_bootstrap_consensus(self):
calculator = DistanceCalculator("blosum62")
constructor = DistanceTreeConstructor(calculator, "nj")
tree = Consensus.bootstrap_consensus(self.msa, 100, constructor, Consensus.majority_consensus)
self.assertTrue(isinstance(tree, BaseTree.Tree))
Phylo.write(tree, "./TreeConstruction/bootstrap_consensus.tre", "newick")