本文整理汇总了C++中TopSegmentIteratorConstPtr::slice方法的典型用法代码示例。如果您正苦于以下问题：C++ TopSegmentIteratorConstPtr::slice方法的具体用法？C++ TopSegmentIteratorConstPtr::slice怎么用？C++ TopSegmentIteratorConstPtr::slice使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类TopSegmentIteratorConstPtr的用法示例。
在下文中一共展示了TopSegmentIteratorConstPtr::slice方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。
示例1: checkCallBack
void MappedSegmentMapUpTest::checkCallBack(AlignmentConstPtr alignment)
{
validateAlignment(alignment);
const Genome* child1 = alignment->openGenome("child1");
const Genome* child2 = alignment->openGenome("child2");
TopSegmentIteratorConstPtr top = child2->getTopSegmentIterator();
testTopSegment(alignment, top, "parent");
top->slice(1,2);
testTopSegment(alignment, top, "parent");
top->toReverse();
testTopSegment(alignment, top, "parent");
top = child1->getTopSegmentIterator();
testTopSegment(alignment, top, "parent");
top->slice(1,2);
testTopSegment(alignment, top, "parent");
top->toReverse();
testTopSegment(alignment, top, "parent");
const Genome* g1 = alignment->openGenome("g1");
for (hal_size_t i = 0; i < g1->getNumTopSegments(); ++i)
{
top = g1->getTopSegmentIterator(i);
testTopSegment(alignment, top, "parent");
top->slice(1,0);
testTopSegment(alignment, top, "parent");
top->toReverse();
testTopSegment(alignment, top, "parent");
top->slice(0,1);
testTopSegment(alignment, top, "parent");
top->toReverse();
testTopSegment(alignment, top, "parent");
}
}示例2: checkCallBack
void TopSegmentSimpleIteratorTest::checkCallBack(AlignmentConstPtr alignment)
{
const Genome* ancGenome = alignment->openGenome("Anc0");
CuAssertTrue(_testCase,
ancGenome->getNumTopSegments() == _topSegments.size());
TopSegmentIteratorConstPtr tsIt = ancGenome->getTopSegmentIterator(0);
for (size_t i = 0; i < ancGenome->getNumTopSegments(); ++i)
{
CuAssertTrue(_testCase,
(size_t)tsIt->getTopSegment()->getArrayIndex() == i);
_topSegments[i].compareTo(tsIt, _testCase);
tsIt->toRight();
}
tsIt = ancGenome->getTopSegmentIterator(
ancGenome->getNumTopSegments() - 1);
for (hal_index_t i = ancGenome->getNumTopSegments() - 1; i >= 0; --i)
{
CuAssertTrue(_testCase, tsIt->getTopSegment()->getArrayIndex() == i);
_topSegments[i].compareTo(tsIt, _testCase);
tsIt->toLeft();
}
tsIt = ancGenome->getTopSegmentIterator(0);
tsIt->slice(0, tsIt->getLength() - 1);
for (hal_index_t i = 0; i < (hal_index_t)ancGenome->getSequenceLength(); ++i)
{
CuAssertTrue(_testCase, tsIt->getLength() == 1);
CuAssertTrue(_testCase, tsIt->getStartPosition() == i);
tsIt->toRight(tsIt->getStartPosition() + 1);
}
tsIt = ancGenome->getTopSegmentIterator(
ancGenome->getNumTopSegments() - 1);
tsIt->slice(tsIt->getLength() - 1, 0);
for (hal_index_t i = ancGenome->getSequenceLength() - 1; i >= 0; --i)
{
CuAssertTrue(_testCase, tsIt->getLength() == 1);
CuAssertTrue(_testCase, tsIt->getStartPosition() == i);
tsIt->toLeft(tsIt->getStartPosition() - 1);
}
tsIt = ancGenome->getTopSegmentIterator(0);
tsIt->toReverse();
CuAssertTrue(_testCase, tsIt->getReversed() == true);
tsIt->slice(tsIt->getLength() - 1, 0);
for (hal_index_t i = 0; i < (hal_index_t)ancGenome->getSequenceLength(); ++i)
{
CuAssertTrue(_testCase, tsIt->getLength() == 1);
CuAssertTrue(_testCase, tsIt->getStartPosition() == i);
tsIt->toLeft(tsIt->getStartPosition() + 1);
}
tsIt = ancGenome->getTopSegmentIterator(
ancGenome->getNumTopSegments() - 1);
tsIt->toReverse();
tsIt->slice(0, tsIt->getLength() - 1);
for (hal_index_t i = ancGenome->getSequenceLength() - 1; i >= 0; --i)
{
CuAssertTrue(_testCase, tsIt->getLength() == 1);
CuAssertTrue(_testCase, tsIt->getStartPosition() == i);
tsIt->toRight(tsIt->getStartPosition() - 1);
}
}