Python Domain.set_boundary方法代碼示例

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def _create_domain(self,d_length,
                            d_width,
                            dx,
                            dy,
                            elevation_0,
                            elevation_1,
                            stage_0,
                            stage_1):
        
        points, vertices, boundary = rectangular_cross(int(d_length/dx), int(d_width/dy),
                                                        len1=d_length, len2=d_width)
        domain = Domain(points, vertices, boundary)   
        domain.set_name('Test_Outlet_Inlet')                 # Output name
        domain.set_store()
        domain.set_default_order(2)
        domain.H0 = 0.01
        domain.tight_slope_limiters = 1

        #print 'Size', len(domain)

        #------------------------------------------------------------------------------
        # Setup initial conditions
        #------------------------------------------------------------------------------

        def elevation(x, y):
            """Set up a elevation
            """
            
            z = numpy.zeros(x.shape,dtype='d')
            z[:] = elevation_0
            
            numpy.putmask(z, x > d_length/2, elevation_1)
    
            return z
            
        def stage(x,y):
            """Set up stage
            """
            z = numpy.zeros(x.shape,dtype='d')
            z[:] = stage_0
            
            numpy.putmask(z, x > d_length/2, stage_1)

            return z
            
        #print 'Setting Quantities....'
        domain.set_quantity('elevation', elevation)  # Use function for elevation
        domain.set_quantity('stage',  stage)   # Use function for elevation

        Br = anuga.Reflective_boundary(domain)
        domain.set_boundary({'left': Br, 'right': Br, 'top': Br, 'bottom': Br})
        
        return domain

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def set_boundary(self, boundary_map):
        ## Specialisation of set_boundary, which also updates the 'boundary_flux_type'
        Sww_domain.set_boundary(self,boundary_map)
        
        # Add a flag which can be used to distinguish flux boundaries within
        # compute_fluxes_central
        # Initialise to zero (which means 'not a flux_boundary')
        self.boundary_flux_type = self.boundary_edges*0
       
        # HACK to set the values of domain.boundary_flux 
        for i in range(len(self.boundary_objects)):
            # Record the first 10 characters of the name of the boundary.
            # FIXME: There must be a better way than this!
            bndry_name = self.boundary_objects[i][1].__repr__()[0:10]

            if(bndry_name=='zero_mass_'):
                # Create flag 'boundary_flux_type' that can be read in
                # compute_fluxes_central
                self.boundary_flux_type[i]=1

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def test_merge_swwfiles(self):
        from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular, \
                                                                    rectangular_cross
        from anuga.shallow_water.shallow_water_domain import Domain
        from anuga.file.sww import SWW_file
        from anuga.abstract_2d_finite_volumes.generic_boundary_conditions import \
            Dirichlet_boundary

        Bd = Dirichlet_boundary([0.5, 0., 0.])

        # Create shallow water domain
        domain = Domain(*rectangular_cross(2, 2))
        domain.set_name('test1')
        domain.set_quantity('elevation', 2)
        domain.set_quantity('stage', 5)
        domain.set_boundary({'left': Bd, 'right': Bd, 'top': Bd, 'bottom': Bd})
        for t in domain.evolve(yieldstep=0.5, finaltime=1):
            pass
            
        domain = Domain(*rectangular(3, 3))
        domain.set_name('test2')
        domain.set_quantity('elevation', 3)
        domain.set_quantity('stage', 50)
        domain.set_boundary({'left': Bd, 'right': Bd, 'top': Bd, 'bottom': Bd})
        for t in domain.evolve(yieldstep=0.5, finaltime=1):
            pass
                
        outfile = 'test_out.sww'
        _sww_merge(['test1.sww', 'test2.sww'], outfile)
        self.assertTrue(os.access(outfile, os.F_OK))  
        
        # remove temp files
        if not sys.platform == 'win32':		
			os.remove('test1.sww')
			os.remove('test2.sww')
			os.remove(outfile)      

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def test_read_sww(self):
        """
        Save to an sww file and then read back the info.
        Here we store the info "uniquely"
        """

        # ---------------------------------------------------------------------
        # Import necessary modules
        # ---------------------------------------------------------------------
        from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular_cross
        from anuga.shallow_water.shallow_water_domain import Domain
        from anuga import Reflective_boundary
        from anuga.abstract_2d_finite_volumes.generic_boundary_conditions import Dirichlet_boundary, Time_boundary

        # ---------------------------------------------------------------------
        # Setup computational domain
        # ---------------------------------------------------------------------
        length = 8.0
        width = 4.0
        dx = dy = 2  # Resolution: Length of subdivisions on both axes

        inc = 0.05  # Elevation increment

        points, vertices, boundary = rectangular_cross(int(length / dx), int(width / dy), len1=length, len2=width)
        domain = Domain(points, vertices, boundary)
        domain.set_name("read_sww_test" + str(domain.processor))  # Output name
        domain.set_quantities_to_be_stored({"elevation": 2, "stage": 2, "xmomentum": 2, "ymomentum": 2, "friction": 1})

        domain.set_store_vertices_uniquely(True)

        # ---------------------------------------------------------------------
        # Setup initial conditions
        # ---------------------------------------------------------------------
        domain.set_quantity("elevation", 0.0)  # Flat bed initially
        domain.set_quantity("friction", 0.01)  # Constant friction
        domain.set_quantity("stage", 0.0)  # Dry initial condition

        # ------------------------------------------------------------------
        # Setup boundary conditions
        # ------------------------------------------------------------------
        Bi = Dirichlet_boundary([0.4, 0, 0])  # Inflow
        Br = Reflective_boundary(domain)  # Solid reflective wall
        Bo = Dirichlet_boundary([-5, 0, 0])  # Outflow

        domain.set_boundary({"left": Bi, "right": Bo, "top": Br, "bottom": Br})

        # -------------------------------------------------------------------
        # Evolve system through time
        # -------------------------------------------------------------------

        for t in domain.evolve(yieldstep=1, finaltime=4.0):
            pass

        # Check that quantities have been stored correctly
        source = domain.get_name() + ".sww"

        # x = fid.variables['x'][:]
        # y = fid.variables['y'][:]
        # stage = fid.variables['stage'][:]
        # elevation = fid.variables['elevation'][:]
        # fid.close()

        # assert len(stage.shape) == 2
        # assert len(elevation.shape) == 2

        # M, N = stage.shape

        sww_file = sww.Read_sww(source)

        # print 'last frame number',sww_file.get_last_frame_number()

        assert num.allclose(sww_file.x, domain.get_vertex_coordinates()[:, 0])
        assert num.allclose(sww_file.y, domain.get_vertex_coordinates()[:, 1])

        assert num.allclose(sww_file.time, [0.0, 1.0, 2.0, 3.0, 4.0])

        M = domain.get_number_of_triangles()

        assert num.allclose(num.reshape(num.arange(3 * M), (M, 3)), sww_file.vertices)

        last_frame_number = sww_file.get_last_frame_number()
        assert last_frame_number == 4

        assert num.allclose(sww_file.get_bounds(), [0.0, length, 0.0, width])

        assert "stage" in sww_file.quantities.keys()
        assert "friction" in sww_file.quantities.keys()
        assert "elevation" in sww_file.quantities.keys()
        assert "xmomentum" in sww_file.quantities.keys()
        assert "ymomentum" in sww_file.quantities.keys()

        for qname, q in sww_file.read_quantities(last_frame_number).items():

            # print qname
            # print num.linalg.norm(num.abs((domain.get_quantity(qname).get_values()-q).flatten()), ord=1)

            assert num.allclose(domain.get_quantity(qname).get_values(), q)

        # -----------------------------------------
        # Start the evolution off again at frame 3
#.........這裏部分代碼省略.........

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def test_get_mesh_and_quantities_from_unique_vertices_DE0_sww_file(self):
        """test_get_mesh_and_quantities_from_unique_vertices_sww_file(self):
        """     
        
        # Generate a test sww file with non trivial georeference
        
        import time, os

        # Setup
        #from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular

        # Create basic mesh (100m x 5m)
        width = 5
        length = 50
        t_end = 10
        points, vertices, boundary = rectangular(10, 1, length, width)

        # Create shallow water domain
        domain = Domain(points, vertices, boundary,
                        geo_reference = Geo_reference(56,308500,6189000))

        domain.set_name('test_get_mesh_and_quantities_from_unique_vertices_sww_file')
        swwfile = domain.get_name() + '.sww'
        domain.set_datadir('.')
        domain.set_flow_algorithm('DE0')
        domain.set_store_vertices_uniquely()

        Br = Reflective_boundary(domain)    # Side walls
        Bd = Dirichlet_boundary([1, 0, 0])  # inflow

        domain.set_boundary( {'left': Bd, 'right': Bd, 'top': Br, 'bottom': Br})

        for t in domain.evolve(yieldstep=1, finaltime = t_end):
            pass

        
        # Read it

        # Get mesh and quantities from sww file
        X = get_mesh_and_quantities_from_file(swwfile,
                                              quantities=['elevation',
                                                          'stage',
                                                          'xmomentum',
                                                          'ymomentum'], 
                                              verbose=False)
        mesh, quantities, time = X 

        #print quantities
        #print time

        dhash = domain.get_nodes()[:,0]*10+domain.get_nodes()[:,1]
        mhash = mesh.nodes[:,0]*10+mesh.nodes[:,1]        


        #print 'd_nodes',len(dhash)
        #print 'm_nodes',len(mhash)
        di = num.argsort(dhash)
        mi = num.argsort(mhash)
        minv = num.argsort(mi)
        dinv = num.argsort(di)

        #print 'd_tri',len(domain.get_triangles())
        #print 'm_tri',len(mesh.triangles)
        
        # Check that mesh has been recovered
        # triangle order should be ok
        assert num.allclose(mesh.nodes[mi,:],domain.get_nodes()[di,:])
        assert num.alltrue(minv[mesh.triangles] == dinv[domain.get_triangles()])


        # Check that time has been recovered
        assert num.allclose(time, range(t_end+1))

        z=domain.get_quantity('elevation').get_values(location='vertices').flatten()
        

        
        assert num.allclose(quantities['elevation'], z)

        for q in ['stage', 'xmomentum', 'ymomentum']:
            # Get quantity at last timestep
            q_ref=domain.get_quantity(q).get_values(location='vertices').flatten()

            #print q,quantities[q]
            q_sww=quantities[q][-1,:]
            
            msg = 'Quantity %s failed to be recovered' %q
            assert num.allclose(q_ref, q_sww, atol=1.0e-6), msg

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def test_get_mesh_and_quantities_from_de0_sww_file(self):
        """test_get_mesh_and_quantities_from_sww_file(self):
        """     
        
        # Generate a test sww file with non trivial georeference
        
        import time, os

        # Setup
        #from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular

        # Create basic mesh (100m x 5m)
        width = 5
        length = 50
        t_end = 10
        points, vertices, boundary = rectangular(length, width, 50, 5)

        # Create shallow water domain
        domain = Domain(points, vertices, boundary,
                        geo_reference = Geo_reference(56,308500,6189000))

        domain.set_name('test_get_mesh_and_quantities_from_sww_file')
        swwfile = domain.get_name() + '.sww'
        domain.set_datadir('.')
        domain.set_flow_algorithm('DE0')

        Br = Reflective_boundary(domain)    # Side walls
        Bd = Dirichlet_boundary([1, 0, 0])  # inflow

        domain.set_boundary( {'left': Bd, 'right': Bd, 'top': Br, 'bottom': Br})

        for t in domain.evolve(yieldstep=1, finaltime = t_end):
            pass

        
        # Read it

        # Get mesh and quantities from sww file
        X = get_mesh_and_quantities_from_file(swwfile,
                                              quantities=['elevation',
                                                          'stage',
                                                          'xmomentum',
                                                          'ymomentum'], 
                                              verbose=False)
        mesh, quantities, time = X
        

        
        # Check that mesh has been recovered
        assert num.alltrue(mesh.triangles == domain.get_triangles())
        assert num.allclose(mesh.nodes, domain.get_nodes())

        # Check that time has been recovered
        assert num.allclose(time, range(t_end+1))

        # Check that quantities have been recovered
        # (sww files use single precision)
        z=domain.get_quantity('elevation').get_values(location='unique vertices')
        assert num.allclose(quantities['elevation'], z)

        for q in ['stage', 'xmomentum', 'ymomentum']:
            # Get quantity at last timestep
            q_ref=domain.get_quantity(q).get_values(location='unique vertices')

            #print q,quantities[q]
            q_sww=quantities[q][-1,:]
            
            msg = 'Quantity %s failed to be recovered' %q
            assert num.allclose(q_ref, q_sww, atol=1.0e-2), msg

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def test_sww2domain1(self):
        ################################################
        #Create a test domain, and evolve and save it.
        ################################################
        #from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular

        #Create basic mesh

        yiel=0.01
        points, vertices, boundary = rectangular(10,10)

        #print "=============== boundary rect ======================="
        #print boundary

        #Create shallow water domain
        domain = Domain(points, vertices, boundary)
        domain.geo_reference = Geo_reference(56,11,11)
        domain.smooth = False
        domain.store = True
        domain.set_name('bedslope')
        domain.default_order=2
        #Bed-slope and friction
        domain.set_quantity('elevation', lambda x,y: -x/3)
        domain.set_quantity('friction', 0.1)
        # Boundary conditions
        from math import sin, pi
        Br = Reflective_boundary(domain)
        Bt = Transmissive_boundary(domain)
        Bd = Dirichlet_boundary([0.2,0.,0.])
        Bw = Time_boundary(domain=domain,function=lambda t: [(0.1*sin(t*2*pi)), 0.0, 0.0])

        #domain.set_boundary({'left': Bd, 'right': Br, 'top': Br, 'bottom': Br})
        domain.set_boundary({'left': Bd, 'right': Bd, 'top': Bd, 'bottom': Bd})

        domain.quantities_to_be_stored['xmomentum'] = 2
        domain.quantities_to_be_stored['ymomentum'] = 2
        #Initial condition
        h = 0.05
        elevation = domain.quantities['elevation'].vertex_values
        domain.set_quantity('stage', elevation + h)

        domain.check_integrity()
        #Evolution
        #domain.tight_slope_limiters = 1
        for t in domain.evolve(yieldstep = yiel, finaltime = 0.05):
            #domain.write_time()
            pass

        #print boundary


        filename = domain.datadir + os.sep + domain.get_name() + '.sww'
        domain2 = load_sww_as_domain(filename, None, fail_if_NaN=False,
                                        verbose=self.verbose)

        # Unfortunately we loss the boundaries top, bottom, left and right,
        # they are now all lumped into "exterior"

        #print "=============== boundary domain2 ======================="
        #print domain2.boundary
        

        #print domain2.get_boundary_tags()
        
        #points, vertices, boundary = rectangular(15,15)
        #domain2.boundary = boundary
        ###################
        ##NOW TEST IT!!!
        ###################

        os.remove(filename)

        bits = ['vertex_coordinates']
        for quantity in ['stage']:
            bits.append('get_quantity("%s").get_integral()' % quantity)
            bits.append('get_quantity("%s").get_values()' % quantity)

        for bit in bits:
            #print 'testing that domain.'+bit+' has been restored'
            #print bit
            #print 'done'
            #print eval('domain.'+bit)
            #print eval('domain2.'+bit)
            assert num.allclose(eval('domain.'+bit),eval('domain2.'+bit))

        ######################################
        #Now evolve them both, just to be sure
        ######################################x
        from time import sleep

        final = .1
        domain.set_quantity('friction', 0.1)
        domain.store = False
        domain.set_boundary({'exterior': Bd, 'left' : Bd, 'right': Bd, 'top': Bd, 'bottom': Bd})


        for t in domain.evolve(yieldstep = yiel, finaltime = final):
            #domain.write_time()
            pass

#.........這裏部分代碼省略.........

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def test_get_maximum_inundation_from_sww(self):
        """test_get_maximum_inundation_from_sww(self)

        Test of get_maximum_inundation_elevation()
        and get_maximum_inundation_location().
   
        This is based on test_get_maximum_inundation_3(self) but works with the
        stored results instead of with the internal data structure.

        This test uses the underlying get_maximum_inundation_data for tests
        """

        verbose = False
        from anuga.config import minimum_storable_height
        
        initial_runup_height = -0.4
        final_runup_height = -0.3
        filename = 'runup_test_2'

        #--------------------------------------------------------------
        # Setup computational domain
        #--------------------------------------------------------------
        N = 10
        points, vertices, boundary = rectangular_cross(N, N)
        domain = Domain(points, vertices, boundary)
        domain.set_name(filename)
        domain.set_maximum_allowed_speed(1.0)
        #domain.set_minimum_storable_height(1.0e-5)
        domain.set_store_vertices_uniquely()

        # FIXME: This works better with old limiters so far
        domain.tight_slope_limiters = 0

        #--------------------------------------------------------------
        # Setup initial conditions
        #--------------------------------------------------------------
        def topography(x, y):
            return -x/2                             # linear bed slope

        # Use function for elevation
        domain.set_quantity('elevation', topography)
        domain.set_quantity('friction', 0.)                # Zero friction
        # Constant negative initial stage
        domain.set_quantity('stage', initial_runup_height)

        #--------------------------------------------------------------
        # Setup boundary conditions
        #--------------------------------------------------------------
        Br = Reflective_boundary(domain)                       # Reflective wall
        Bd = Dirichlet_boundary([final_runup_height, 0, 0])    # Constant inflow

        # All reflective to begin with (still water)
        domain.set_boundary({'left': Br, 'right': Br, 'top': Br, 'bottom': Br})

        #--------------------------------------------------------------
        # Test initial inundation height
        #--------------------------------------------------------------
        indices = domain.get_wet_elements()
        z = domain.get_quantity('elevation').\
                get_values(location='centroids', indices=indices)
        assert num.alltrue(z < initial_runup_height)

        q_ref = domain.get_maximum_inundation_elevation(minimum_height=minimum_storable_height)
        # First order accuracy
        assert num.allclose(q_ref, initial_runup_height, rtol=1.0/N)

        #--------------------------------------------------------------
        # Let triangles adjust
        #--------------------------------------------------------------
        q_max = None
        for t in domain.evolve(yieldstep = 0.1, finaltime = 1.0):
            q = domain.get_maximum_inundation_elevation(minimum_height=minimum_storable_height)

            if verbose:
                domain.write_time()
                print q
                
            if q > q_max:
                q_max = q

        #--------------------------------------------------------------
        # Test inundation height again
        #--------------------------------------------------------------
        #q_ref = domain.get_maximum_inundation_elevation()
        q = get_maximum_inundation_elevation(filename+'.sww')
        msg = 'We got %f, should have been %f' % (q, q_max)
        assert num.allclose(q, q_max, rtol=2.0/N), msg

        msg = 'We got %f, should have been %f' % (q, initial_runup_height)
        assert num.allclose(q, initial_runup_height, rtol = 1.0/N), msg

        # Test error condition if time interval is out
        try:
            q = get_maximum_inundation_elevation(filename+'.sww',
                                                 time_interval=[2.0, 3.0])
        except ValueError:
            pass
        else:
            msg = 'should have caught wrong time interval'
            raise Exception, msg
#.........這裏部分代碼省略.........

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def test_get_flow_through_cross_section_stored_uniquely(self):
        """test_get_flow_through_cross_section_stored_uniquely(self):

        Test that the total flow through a cross section can be
        correctly obtained from an sww file.
        
        This test creates a flat bed with a known flow through it and tests
        that the function correctly returns the expected flow.

        The specifics are
        u = 2 m/s
        h = 1 m
        w = 3 m (width of channel)

        q = u*h*w = 6 m^3/s
       
        
        """

        import time, os
        from anuga.file.netcdf import NetCDFFile

        # Setup
        #from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular

        # Create basic mesh (20m x 3m)
        width = 3
        length = 20
        t_end = 3
        points, vertices, boundary = rectangular(length, width,
                                                 length, width)

        # Create shallow water domain
        domain = Domain(points, vertices, boundary)
        domain.default_order = 2
        domain.set_minimum_storable_height(0.01)

        domain.set_name('flowtest_uniquely')
        swwfile = domain.get_name() + '.sww'

        domain.set_store_vertices_uniquely()
        
        domain.set_datadir('.')
        domain.format = 'sww'
        domain.smooth = True

        h = 1.0
        u = 2.0
        uh = u*h

        Br = Reflective_boundary(domain)     # Side walls
        Bd = Dirichlet_boundary([h, uh, 0])  # 2 m/s across the 3 m inlet: 


        
        domain.set_quantity('elevation', 0.0)
        domain.set_quantity('stage', h)
        domain.set_quantity('xmomentum', uh)
        domain.set_boundary( {'left': Bd, 'right': Bd, 'top': Br, 'bottom': Br})

        for t in domain.evolve(yieldstep=1, finaltime = t_end):
            pass

        # Check that momentum is as it should be in the interior

        I = [[0, width/2.],
             [length/2., width/2.],
             [length, width/2.]]
        
        f = file_function(swwfile,
                          quantities=['stage', 'xmomentum', 'ymomentum'],
                          interpolation_points=I,
                          verbose=False)
        for t in range(t_end+1):
            for i in range(3):
                assert num.allclose(f(t, i), [1, 2, 0], atol=1.0e-6)
            

        # Check flows through the middle
        for i in range(5):
            x = length/2. + i*0.23674563 # Arbitrary
            cross_section = [[x, 0], [x, width]]
            time, Q = get_flow_through_cross_section(swwfile,
                                                     cross_section,
                                                     verbose=False)

            assert num.allclose(Q, uh*width)


       
        # Try the same with partial lines
        x = length/2.
        for i in range(5):
            start_point = [length/2., i*width/5.]
            #print start_point
                            
            cross_section = [start_point, [length/2., width]]
            time, Q = get_flow_through_cross_section(swwfile,
                                                     cross_section,
                                                     verbose=False)
#.........這裏部分代碼省略.........

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def test_get_maximum_inundation_de0(self):
        """Test that sww information can be converted correctly to maximum
        runup elevation and location (without and with georeferencing)

        This test creates a slope and a runup which is maximal (~11m) at around 10s
        and levels out to the boundary condition (1m) at about 30s.
        """

        import time, os
        from anuga.file.netcdf import NetCDFFile

        #Setup

        #from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular

        # Create basic mesh (100m x 100m)
        points, vertices, boundary = rectangular(20, 5, 100, 50)

        # Create shallow water domain
        domain = Domain(points, vertices, boundary)
        domain.default_order = 2
        domain.set_minimum_storable_height(0.01)

        filename = 'runup_test_3'
        domain.set_name(filename)
        swwfile = domain.get_name() + '.sww'

        domain.set_datadir('.')
        domain.format = 'sww'
        domain.smooth = True

        # FIXME (Ole): Backwards compatibility
        # Look at sww file and see what happens when
        # domain.tight_slope_limiters = 1
        domain.tight_slope_limiters = 0
        domain.use_centroid_velocities = 0 # Backwards compatibility (7/5/8)        
        
        Br = Reflective_boundary(domain)
        Bd = Dirichlet_boundary([1.0,0,0])


        #---------- First run without geo referencing
        
        domain.set_quantity('elevation', lambda x,y: -0.2*x + 14) # Slope
        domain.set_quantity('stage', -6)
        domain.set_boundary( {'left': Br, 'right': Bd, 'top': Br, 'bottom': Br})

        for t in domain.evolve(yieldstep=1, finaltime = 50):
            pass


        # Check maximal runup
        runup = get_maximum_inundation_elevation(swwfile)
        location = get_maximum_inundation_location(swwfile)
        #print 'Runup, location', runup, location
        assert num.allclose(runup, 4.66666666667)
        assert num.allclose(location[0], 46.666668) 
               
        # Check final runup
        runup = get_maximum_inundation_elevation(swwfile, time_interval=[45,50])
        location = get_maximum_inundation_location(swwfile, time_interval=[45,50])
        #print 'Runup, location:',runup, location

        assert num.allclose(runup, 3.81481488546)
        assert num.allclose(location[0], 51.666668)

        # Check runup restricted to a polygon
        p = [[50,1], [99,1], [99,49], [50,49]]
        runup = get_maximum_inundation_elevation(swwfile, polygon=p)
        location = get_maximum_inundation_location(swwfile, polygon=p)
        #print runup, location

        assert num.allclose(runup, 3.81481488546) 
        assert num.allclose(location[0], 51.6666666)                

        # Check that mimimum_storable_height works
        fid = NetCDFFile(swwfile, netcdf_mode_r) # Open existing file
        
        stage = fid.variables['stage_c'][:]
        z = fid.variables['elevation_c'][:]
        xmomentum = fid.variables['xmomentum_c'][:]
        ymomentum = fid.variables['ymomentum_c'][:]
        
        for i in range(stage.shape[0]):
            h = stage[i]-z # depth vector at time step i
            
            # Check every node location
            for j in range(stage.shape[1]):
                # Depth being either exactly zero implies
                # momentum being zero.
                # Or else depth must be greater than or equal to
                # the minimal storable height
                if h[j] == 0.0:
                    assert xmomentum[i,j] == 0.0
                    assert ymomentum[i,j] == 0.0                
                else:
                    assert h[j] >= 0.0
        
        fid.close()

#.........這裏部分代碼省略.........

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def setUp(self):
        # print "****set up****"
        # Create an sww file

        # Set up an sww that has a geo ref.
        # have it cover an area in Australia.  'gong maybe
        # Don't have many triangles though!

        # Site Name:    GDA-MGA: (UTM with GRS80 ellipsoid)
        # Zone:   56
        # Easting:  222908.705  Northing: 6233785.284
        # Latitude:   -34  0 ' 0.00000 ''  Longitude: 150  0 ' 0.00000 ''
        # Grid Convergence:  -1  40 ' 43.13 ''  Point Scale: 1.00054660

        # geo-ref
        # Zone:   56
        # Easting:  220000  Northing: 6230000

        # have  a big area covered.
        mesh_file = tempfile.mktemp(".tsh")
        points_lat_long = [[-33, 152], [-35, 152], [-35, 150], [-33, 150]]
        spat = Geospatial_data(data_points=points_lat_long, points_are_lats_longs=True)
        points_ab = spat.get_data_points(absolute=True)

        geo = Geo_reference(56, 400000, 6000000)
        spat.set_geo_reference(geo)
        m = Mesh()
        m.add_vertices(spat)
        m.auto_segment()
        m.generate_mesh(verbose=False)
        m.export_mesh_file(mesh_file)

        # Create shallow water domain
        domain = Domain(mesh_file)

        os.remove(mesh_file)

        domain.default_order = 2
        # Set some field values
        # domain.set_quantity('stage', 1.0)
        domain.set_quantity("elevation", -0.5)
        domain.set_quantity("friction", 0.03)

        ######################
        # Boundary conditions
        B = Transmissive_boundary(domain)
        domain.set_boundary({"exterior": B})

        ######################
        # Initial condition - with jumps
        bed = domain.quantities["elevation"].vertex_values
        stage = num.zeros(bed.shape, num.float)

        h = 0.3
        for i in range(stage.shape[0]):
            if i % 2 == 0:
                stage[i, :] = bed[i, :] + h
            else:
                stage[i, :] = bed[i, :]

        domain.set_quantity("stage", stage)
        domain.set_quantity("xmomentum", stage * 22.0)
        domain.set_quantity("ymomentum", stage * 55.0)

        domain.distribute_to_vertices_and_edges()

        self.domain = domain

        C = domain.get_vertex_coordinates()
        self.X = C[:, 0:6:2].copy()
        self.Y = C[:, 1:6:2].copy()

        self.F = bed

        # sww_file = tempfile.mktemp("")
        self.domain.set_name("tid_P0")
        self.domain.format = "sww"
        self.domain.smooth = True
        self.domain.reduction = mean

        sww = SWW_file(self.domain)
        sww.store_connectivity()
        sww.store_timestep()
        self.domain.time = 2.0
        sww.store_timestep()
        self.sww = sww  # so it can be deleted

        # Create another sww file
        mesh_file = tempfile.mktemp(".tsh")
        points_lat_long = [[-35, 152], [-36, 152], [-36, 150], [-35, 150]]
        spat = Geospatial_data(data_points=points_lat_long, points_are_lats_longs=True)
        points_ab = spat.get_data_points(absolute=True)

        geo = Geo_reference(56, 400000, 6000000)
        spat.set_geo_reference(geo)
        m = Mesh()
        m.add_vertices(spat)
        m.auto_segment()
        m.generate_mesh(verbose=False)
        m.export_mesh_file(mesh_file)
#.........這裏部分代碼省略.........

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def test_inundation_damage_list(self):

        # create mesh
        mesh_file = tempfile.mktemp(".tsh")
        points = [[0.0, 0.0], [6.0, 0.0], [6.0, 6.0], [0.0, 6.0]]
        m = Mesh()
        m.add_vertices(points)
        m.auto_segment()
        m.generate_mesh(verbose=False)
        m.export_mesh_file(mesh_file)

        # Create shallow water domain
        domain = Domain(mesh_file)
        os.remove(mesh_file)

        domain.default_order = 2

        # Set some field values
        domain.set_quantity("elevation", elevation_function)
        domain.set_quantity("friction", 0.03)
        domain.set_quantity("xmomentum", 22.0)
        domain.set_quantity("ymomentum", 55.0)

        ######################
        # Boundary conditions
        B = Transmissive_boundary(domain)
        domain.set_boundary({"exterior": B})

        # This call mangles the stage values.
        domain.distribute_to_vertices_and_edges()
        domain.set_quantity("stage", 0.3)

        # sww_file = tempfile.mktemp("")
        domain.set_name("datatest" + str(time.time()))
        domain.format = "sww"
        domain.smooth = True
        domain.reduction = mean

        sww = SWW_file(domain)
        sww.store_connectivity()
        sww.store_timestep()
        domain.set_quantity("stage", -0.3)
        domain.time = 2.0
        sww.store_timestep()

        # Create a csv file
        csv_file = tempfile.mktemp(".csv")
        fd = open(csv_file, "wb")
        writer = csv.writer(fd)
        writer.writerow(["x", "y", STR_VALUE_LABEL, CONT_VALUE_LABEL, "ROOF_TYPE", WALL_TYPE_LABEL, SHORE_DIST_LABEL])
        writer.writerow([5.5, 0.5, "10", "130000", "Metal", "Timber", 20])
        writer.writerow([4.5, 1.0, "150", "76000", "Metal", "Double Brick", 20])
        writer.writerow([0.1, 1.5, "100", "76000", "Metal", "Brick Veneer", 300])
        writer.writerow([6.1, 1.5, "100", "76000", "Metal", "Brick Veneer", 300])
        fd.close()

        extension = ".csv"
        csv_fileII = tempfile.mktemp(extension)
        fd = open(csv_fileII, "wb")
        writer = csv.writer(fd)
        writer.writerow(["x", "y", STR_VALUE_LABEL, CONT_VALUE_LABEL, "ROOF_TYPE", WALL_TYPE_LABEL, SHORE_DIST_LABEL])
        writer.writerow([5.5, 0.5, "10", "130000", "Metal", "Timber", 20])
        writer.writerow([4.5, 1.0, "150", "76000", "Metal", "Double Brick", 20])
        writer.writerow([0.1, 1.5, "100", "76000", "Metal", "Brick Veneer", 300])
        writer.writerow([6.1, 1.5, "100", "76000", "Metal", "Brick Veneer", 300])
        fd.close()

        sww_file = domain.get_name() + "." + domain.format
        # print "sww_file",sww_file
        marker = "_gosh"
        inundation_damage(sww_file, [csv_file, csv_fileII], exposure_file_out_marker=marker, verbose=False)

        # Test one file
        csv_handle = Exposure(csv_file[:-4] + marker + extension)
        struct_loss = csv_handle.get_column(EventDamageModel.STRUCT_LOSS_TITLE)
        # print "struct_loss",struct_loss
        struct_loss = [float(x) for x in struct_loss]
        # pprint(struct_loss)
        assert num.allclose(struct_loss, [10.0, 150.0, 66.55333347876866, 0.0])
        depth = csv_handle.get_column(EventDamageModel.MAX_DEPTH_TITLE)
        # print "depth",depth
        depth = [float(x) for x in depth]
        assert num.allclose(depth, [3.000000011920929, 2.9166666785875957, 2.2666666785875957, -0.3])

        # Test another file
        csv_handle = Exposure(csv_fileII[:-4] + marker + extension)
        struct_loss = csv_handle.get_column(EventDamageModel.STRUCT_LOSS_TITLE)
        # print "struct_loss",struct_loss
        struct_loss = [float(x) for x in struct_loss]

        # pprint(struct_loss)
        assert num.allclose(struct_loss, [10.0, 150.0, 66.553333478768664, 0.0])
        depth = csv_handle.get_column(EventDamageModel.MAX_DEPTH_TITLE)
        # print "depth",depth
        depth = [float(x) for x in depth]
        assert num.allclose(depth, [3.000000011920929, 2.9166666785875957, 2.2666666785875957, -0.3])
        os.remove(sww.filename)
        os.remove(csv_file)
        os.remove(csv_fileII)

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def test_get_flow_through_cross_section_with_geo(self):
        """test_get_flow_through_cross_section(self):

        Test that the total flow through a cross section can be
        correctly obtained at run-time from the ANUGA domain.

        This test creates a flat bed with a known flow through it and tests
        that the function correctly returns the expected flow.

        The specifics are
        e = -1 m
        u = 2 m/s
        h = 2 m
        w = 3 m (width of channel)

        q = u*h*w = 12 m^3/s

        This run tries it with georeferencing and with elevation = -1
        """

        # Create basic mesh (20m x 3m)
        width = 3
        length = 20
        t_end = 1
        points, vertices, boundary = rectangular(length, width, length, width)

        # Create shallow water domain
        domain = Domain(points, vertices, boundary,
                        geo_reference=Geo_reference(56, 308500, 6189000))

        domain.default_order = 2
        domain.set_quantities_to_be_stored(None)

        e = -1.0
        w = 1.0
        h = w-e
        u = 2.0
        uh = u*h

        Br = Reflective_boundary(domain)     # Side walls
        Bd = Dirichlet_boundary([w, uh, 0])  # 2 m/s across the 3 m inlet: 


        # Initial conditions
        domain.set_quantity('elevation', e)
        domain.set_quantity('stage', w)
        domain.set_quantity('xmomentum', uh)
        domain.set_boundary({'left': Bd, 'right': Bd, 'top': Br, 'bottom': Br})

        # Interpolation points down the middle
        I = [[0, width/2.],
             [length/2., width/2.],
             [length, width/2.]]
        interpolation_points = domain.geo_reference.get_absolute(I)

        for t in domain.evolve(yieldstep=0.1, finaltime=0.5):
            # Shortcuts to quantites
            stage = domain.get_quantity('stage')
            xmomentum = domain.get_quantity('xmomentum')
            ymomentum = domain.get_quantity('ymomentum')

            # Check that quantities are they should be in the interior
            w_t = stage.get_values(interpolation_points)
            uh_t = xmomentum.get_values(interpolation_points)
            vh_t = ymomentum.get_values(interpolation_points)

            assert num.allclose(w_t, w)
            assert num.allclose(uh_t, uh)
            assert num.allclose(vh_t, 0.0, atol=1.0e-6)

            # Check flows through the middle
            for i in range(5):
                x = length/2. + i*0.23674563    # Arbitrary
                cross_section = [[x, 0], [x, width]]

                cross_section = domain.geo_reference.get_absolute(cross_section)
                Q = domain.get_flow_through_cross_section(cross_section,
                                                          verbose=False)

                assert num.allclose(Q, uh*width)

        import cPickle        
        cPickle.dump(domain, open('domain_pickle.pickle', 'w'))
        domain_restored = cPickle.load(open('domain_pickle.pickle'))

        
        for t in domain_restored.evolve(yieldstep=0.1, finaltime=1.0):
            # Shortcuts to quantites
            stage = domain_restored.get_quantity('stage')
            xmomentum = domain_restored.get_quantity('xmomentum')
            ymomentum = domain_restored.get_quantity('ymomentum')
            
            # Check that quantities are they should be in the interior
            w_t = stage.get_values(interpolation_points)
            uh_t = xmomentum.get_values(interpolation_points)
            vh_t = ymomentum.get_values(interpolation_points)

            assert num.allclose(w_t, w)
            assert num.allclose(uh_t, uh)
            assert num.allclose(vh_t, 0.0, atol=1.0e-6)
#.........這裏部分代碼省略.........

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def setUp(self):
        import time
        
        self.verbose = Test_File_Conversion.verbose
        # Create basic mesh
        points, vertices, boundary = rectangular(2, 2)

        # Create shallow water domain
        domain = Domain(points, vertices, boundary)
        domain.default_order = 2

        # Set some field values
        domain.set_quantity('elevation', lambda x,y: -x)
        domain.set_quantity('friction', 0.03)


        ######################
        # Boundary conditions
        B = Transmissive_boundary(domain)
        domain.set_boundary( {'left': B, 'right': B, 'top': B, 'bottom': B})


        ######################
        #Initial condition - with jumps
        bed = domain.quantities['elevation'].vertex_values
        stage = num.zeros(bed.shape, num.float)

        h = 0.3
        for i in range(stage.shape[0]):
            if i % 2 == 0:
                stage[i,:] = bed[i,:] + h
            else:
                stage[i,:] = bed[i,:]

        domain.set_quantity('stage', stage)


        domain.distribute_to_vertices_and_edges()               
        self.initial_stage = copy.copy(domain.quantities['stage'].vertex_values)


        self.domain = domain

        C = domain.get_vertex_coordinates()
        self.X = C[:,0:6:2].copy()
        self.Y = C[:,1:6:2].copy()

        self.F = bed

        #Write A testfile (not realistic. Values aren't realistic)
        self.test_MOST_file = 'most_small'

        longitudes = [150.66667, 150.83334, 151., 151.16667]
        latitudes = [-34.5, -34.33333, -34.16667, -34]

        long_name = 'LON'
        lat_name = 'LAT'

        nx = 4
        ny = 4
        six = 6


        for ext in ['_ha.nc', '_ua.nc', '_va.nc', '_e.nc']:
            fid = NetCDFFile(self.test_MOST_file + ext, netcdf_mode_w)

            fid.createDimension(long_name,nx)
            fid.createVariable(long_name,netcdf_float,(long_name,))
            fid.variables[long_name].point_spacing='uneven'
            fid.variables[long_name].units='degrees_east'
            fid.variables[long_name][:] = longitudes

            fid.createDimension(lat_name,ny)
            fid.createVariable(lat_name,netcdf_float,(lat_name,))
            fid.variables[lat_name].point_spacing='uneven'
            fid.variables[lat_name].units='degrees_north'
            fid.variables[lat_name][:] = latitudes

            fid.createDimension('TIME',six)
            fid.createVariable('TIME',netcdf_float,('TIME',))
            fid.variables['TIME'].point_spacing='uneven'
            fid.variables['TIME'].units='seconds'
            fid.variables['TIME'][:] = [0.0, 0.1, 0.6, 1.1, 1.6, 2.1]


            name = ext[1:3].upper()
            if name == 'E.': name = 'ELEVATION'
            fid.createVariable(name,netcdf_float,('TIME', lat_name, long_name))
            fid.variables[name].units='CENTIMETERS'
            fid.variables[name].missing_value=-1.e+034

            fid.variables[name][:] = [[[0.3400644, 0, -46.63519, -6.50198],
                                              [-0.1214216, 0, 0, 0],
                                              [0, 0, 0, 0],
                                              [0, 0, 0, 0]],
                                             [[0.3400644, 2.291054e-005, -23.33335, -6.50198],
                                              [-0.1213987, 4.581959e-005, -1.594838e-007, 1.421085e-012],
                                              [2.291054e-005, 4.582107e-005, 4.581715e-005, 1.854517e-009],
                                              [0, 2.291054e-005, 2.291054e-005, 0]],
                                             [[0.3400644, 0.0001374632, -23.31503, -6.50198],
#.........這裏部分代碼省略.........

# 需要導入模塊: from anuga.shallow_water.shallow_water_domain import Domain [as 別名]
# 或者: from anuga.shallow_water.shallow_water_domain.Domain import set_boundary [as 別名]
    def test_sww2pts_centroids_de0(self):
        """Test that sww information can be converted correctly to pts data at specified coordinates
        - in this case, the centroids.
        """

        import time, os
        from anuga.file.netcdf import NetCDFFile
        # Used for points that lie outside mesh
        NODATA_value = 1758323

        # Setup
        from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular

        # Create shallow water domain
        domain = Domain(*rectangular(2, 2))

        B = Transmissive_boundary(domain)
        domain.set_boundary( {'left': B, 'right': B, 'top': B, 'bottom': B})

        domain.set_name('datatest_de0')

        ptsfile = domain.get_name() + '_elevation.pts'
        swwfile = domain.get_name() + '.sww'

        domain.set_datadir('.')
        domain.format = 'sww'
        domain.set_quantity('elevation', lambda x,y: -x-y)

        domain.geo_reference = Geo_reference(56,308500,6189000)

        sww = SWW_file(domain)
        sww.store_connectivity()
        sww.store_timestep()

        #self.domain.tight_slope_limiters = 1
        domain.evolve_to_end(finaltime = 0.01)
        sww.store_timestep()

        # Check contents in NetCDF
        fid = NetCDFFile(sww.filename, netcdf_mode_r)

        # Get the variables
        x = fid.variables['x'][:]
        y = fid.variables['y'][:]
        elevation = fid.variables['elevation'][:]
        time = fid.variables['time'][:]
        stage = fid.variables['stage'][:]

        volumes = fid.variables['volumes'][:]


        # Invoke interpolation for vertex points       
        points = num.concatenate( (x[:,num.newaxis],y[:,num.newaxis]), axis=1 )
        points = num.ascontiguousarray(points)
        sww2pts(domain.get_name() + '.sww',
                quantity = 'elevation',
                data_points = points,
                NODATA_value = NODATA_value)
        ref_point_values = elevation
        point_values = Geospatial_data(ptsfile).get_attributes()
        #print 'P', point_values
        #print 'Ref', ref_point_values        
        assert num.allclose(point_values, ref_point_values)        



        # Invoke interpolation for centroids
        points = domain.get_centroid_coordinates()
        #print points
        sww2pts(domain.get_name() + '.sww',
                quantity = 'elevation',
                data_points = points,
                NODATA_value = NODATA_value)
        #ref_point_values = [-0.5, -0.5, -1, -1, -1, -1, -1.5, -1.5]   #At centroids

        ref_point_values = [-0.77777777, -0.77777777, -0.99999998, -0.99999998, 
                             -0.99999998, -0.99999998, -1.22222221, -1.22222221]
        point_values = Geospatial_data(ptsfile).get_attributes()
        #print 'P', point_values
        #print 'Ref', ref_point_values        
        assert num.allclose(point_values, ref_point_values)        

        fid.close()

        #Cleanup
        os.remove(sww.filename)
        os.remove(ptsfile)