本文整理汇总了Python中qiita_db.metadata_template.PrepTemplate.keys方法的典型用法代码示例。如果您正苦于以下问题：Python PrepTemplate.keys方法的具体用法？Python PrepTemplate.keys怎么用？Python PrepTemplate.keys使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类qiita_db.metadata_template.PrepTemplate的用法示例。
在下文中一共展示了PrepTemplate.keys方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: TestPrepTemplate
# 需要导入模块: from qiita_db.metadata_template import PrepTemplate [as 别名]
# 或者: from qiita_db.metadata_template.PrepTemplate import keys [as 别名]
#.........这里部分代码省略.........
obs = self.tester['SKM7.640188']
exp = PrepSample('SKM7.640188', self.tester)
self.assertEqual(obs, exp)
def test_getitem_error(self):
"""Get item raises an error if key does not exists"""
with self.assertRaises(KeyError):
self.tester['Not_a_Sample']
def test_setitem(self):
"""setitem raises an error (currently not allowed)"""
with self.assertRaises(QiitaDBNotImplementedError):
self.tester['SKM7.640188'] = PrepSample('SKM7.640188', self.tester)
def test_delitem(self):
"""delitem raises an error (currently not allowed)"""
with self.assertRaises(QiitaDBNotImplementedError):
del self.tester['SKM7.640188']
def test_iter(self):
"""iter returns an iterator over the sample ids"""
obs = self.tester.__iter__()
self.assertTrue(isinstance(obs, Iterable))
self.assertEqual(set(obs), self.exp_sample_ids)
def test_contains_true(self):
"""contains returns true if the sample id exists"""
self.assertTrue('SKM7.640188' in self.tester)
def test_contains_false(self):
"""contains returns false if the sample id does not exists"""
self.assertFalse('Not_a_Sample' in self.tester)
def test_keys(self):
"""keys returns an iterator over the sample ids"""
obs = self.tester.keys()
self.assertTrue(isinstance(obs, Iterable))
self.assertEqual(set(obs), self.exp_sample_ids)
def test_values(self):
"""values returns an iterator over the values"""
obs = self.tester.values()
self.assertTrue(isinstance(obs, Iterable))
exp = {PrepSample('SKB1.640202', self.tester),
PrepSample('SKB2.640194', self.tester),
PrepSample('SKB3.640195', self.tester),
PrepSample('SKB4.640189', self.tester),
PrepSample('SKB5.640181', self.tester),
PrepSample('SKB6.640176', self.tester),
PrepSample('SKB7.640196', self.tester),
PrepSample('SKB8.640193', self.tester),
PrepSample('SKB9.640200', self.tester),
PrepSample('SKD1.640179', self.tester),
PrepSample('SKD2.640178', self.tester),
PrepSample('SKD3.640198', self.tester),
PrepSample('SKD4.640185', self.tester),
PrepSample('SKD5.640186', self.tester),
PrepSample('SKD6.640190', self.tester),
PrepSample('SKD7.640191', self.tester),
PrepSample('SKD8.640184', self.tester),
PrepSample('SKD9.640182', self.tester),
PrepSample('SKM1.640183', self.tester),
PrepSample('SKM2.640199', self.tester),
PrepSample('SKM3.640197', self.tester),
PrepSample('SKM4.640180', self.tester),
PrepSample('SKM5.640177', self.tester),示例2: EBISubmission
# 需要导入模块: from qiita_db.metadata_template import PrepTemplate [as 别名]
# 或者: from qiita_db.metadata_template.PrepTemplate import keys [as 别名]
#.........这里部分代码省略.........
self.investigation_type))}
)
study_abstract = ET.SubElement(descriptor, 'STUDY_ABSTRACT')
study_abstract.text = clean_whitespace(escape(self.study_abstract))
# Add pubmed IDs
if self.pmids:
study_links = ET.SubElement(study, 'STUDY_LINKS')
for pmid in self.pmids:
self._get_pmid_element(study_links, pmid)
return study_set
def generate_sample_xml(self, samples=None):
"""Generates the sample XML file
Parameters
----------
samples : list of str, optional
The list of samples to be included in the sample xml. If not
provided or an empty list is provided, all the samples are used
Returns
-------
ET.Element
Object with sample XML values
"""
sample_set = ET.Element('SAMPLE_SET', {
'xmlns:xsi': self.xmlns_xsi,
"xsi:noNamespaceSchemaLocation": self.xsi_noNSL % "sample"})
if not samples:
samples = viewkeys(self.samples)
for sample_name in sorted(samples):
sample_info = dict(self.samples[sample_name])
sample = ET.SubElement(sample_set, 'SAMPLE', {
'alias': self._get_sample_alias(sample_name),
'center_name': qiita_config.ebi_center_name}
)
sample_title = ET.SubElement(sample, 'TITLE')
sample_title.text = escape(clean_whitespace(sample_name))
sample_sample_name = ET.SubElement(sample, 'SAMPLE_NAME')
taxon_id = ET.SubElement(sample_sample_name, 'TAXON_ID')
text = sample_info.pop('taxon_id')
taxon_id.text = escape(clean_whitespace(text))
scientific_name = ET.SubElement(
sample_sample_name, 'SCIENTIFIC_NAME')
text = sample_info.pop('scientific_name')
scientific_name.text = escape(clean_whitespace(text))
description = ET.SubElement(sample, 'DESCRIPTION')
text = sample_info.pop('description')
description.text = escape(clean_whitespace(text))
if sample_info:
sample_attributes = ET.SubElement(sample, 'SAMPLE_ATTRIBUTES')
self._add_dict_as_tags_and_values(sample_attributes,
'SAMPLE_ATTRIBUTE',
sample_info)
return sample_set