本文整理汇总了Python中qiita_db.metadata_template.PrepTemplate._get_sample_ids方法的典型用法代码示例。如果您正苦于以下问题：Python PrepTemplate._get_sample_ids方法的具体用法？Python PrepTemplate._get_sample_ids怎么用？Python PrepTemplate._get_sample_ids使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类qiita_db.metadata_template.PrepTemplate的用法示例。
在下文中一共展示了PrepTemplate._get_sample_ids方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: TestPrepTemplate
# 需要导入模块: from qiita_db.metadata_template import PrepTemplate [as 别名]
# 或者: from qiita_db.metadata_template.PrepTemplate import _get_sample_ids [as 别名]
#.........这里部分代码省略.........
# data_type_id
exp = [[3, 'SKB8.640193', 'ANL', 'Test Project', None, None, 1, 2],
[3, 'SKD8.640184', 'ANL', 'Test Project', None, None, 1, 2],
[3, 'SKB7.640196', 'ANL', 'Test Project', None, None, 1, 2]]
self.assertEqual(sorted(obs), sorted(exp))
# The relevant rows have been added to the raw_data_prep_columns
obs = self.conn_handler.execute_fetchall(
"SELECT * FROM qiita.raw_data_prep_columns WHERE raw_data_id=3")
# raw_data_id, column_name, column_type
exp = [[3, "str_column", "varchar"]]
self.assertEqual(obs, exp)
# The new table exists
self.assertTrue(exists_table("prep_3", self.conn_handler))
# The new table hosts the correct values
obs = self.conn_handler.execute_fetchall(
"SELECT * FROM qiita.prep_3")
# sample_id, str_column
exp = [['SKB8.640193', "Value for sample 1"],
['SKD8.640184', "Value for sample 2"],
['SKB7.640196', "Value for sample 3"]]
self.assertEqual(sorted(obs), sorted(exp))
def test_exists_true(self):
"""Exists returns true when the PrepTemplate already exists"""
self.assertTrue(PrepTemplate.exists(self.test_raw_data))
def test_exists_false(self):
"""Exists returns false when the PrepTemplate does not exists"""
self.assertFalse(PrepTemplate.exists(self.new_raw_data))
def test_get_sample_ids(self):
"""get_sample_ids returns the correct set of sample ids"""
obs = self.tester._get_sample_ids(self.conn_handler)
self.assertEqual(obs, self.exp_sample_ids)
def test_len(self):
"""Len returns the correct number of sample ids"""
self.assertEqual(len(self.tester), 27)
def test_getitem(self):
"""Get item returns the correct sample object"""
obs = self.tester['SKM7.640188']
exp = PrepSample('SKM7.640188', self.tester)
self.assertEqual(obs, exp)
def test_getitem_error(self):
"""Get item raises an error if key does not exists"""
with self.assertRaises(KeyError):
self.tester['Not_a_Sample']
def test_setitem(self):
"""setitem raises an error (currently not allowed)"""
with self.assertRaises(QiitaDBNotImplementedError):
self.tester['SKM7.640188'] = PrepSample('SKM7.640188', self.tester)
def test_delitem(self):
"""delitem raises an error (currently not allowed)"""
with self.assertRaises(QiitaDBNotImplementedError):
del self.tester['SKM7.640188']
def test_iter(self):
"""iter returns an iterator over the sample ids"""
obs = self.tester.__iter__()