本文整理汇总了Python中puzzle.plugins.VcfPlugin.variant方法的典型用法代码示例。如果您正苦于以下问题：Python VcfPlugin.variant方法的具体用法？Python VcfPlugin.variant怎么用？Python VcfPlugin.variant使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类puzzle.plugins.VcfPlugin的用法示例。
在下文中一共展示了VcfPlugin.variant方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_variant
# 需要导入模块: from puzzle.plugins import VcfPlugin [as 别名]
# 或者: from puzzle.plugins.VcfPlugin import variant [as 别名]
def test_variant():
vcf_plugin = VcfPlugin(root_path=vcf)
variant = vcf_plugin.variant('hapmap.vcf', 'X_155239821_G_A')
assert variant['CHROM'] == 'X'
assert variant['POS'] == '155239821'
# get 10th variant
variant = vcf_plugin.variant('hapmap.vcf', '3_124998098_C_A')
assert variant['index'] == 10示例2: test_variant
# 需要导入模块: from puzzle.plugins import VcfPlugin [as 别名]
# 或者: from puzzle.plugins.VcfPlugin import variant [as 别名]
def test_variant(case_obj):
vcf_plugin = VcfPlugin()
vcf_plugin.add_case(case_obj)
variant = vcf_plugin.variant(case_obj.case_id, 'X_155239821_G_A')
assert variant['CHROM'] == 'X'
assert int(variant['POS']) == 155239821
# get 10th variant
variant = vcf_plugin.variant(case_obj.case_id, '3_124998098_C_A')
assert variant['index'] == 10