本文整理汇总了Python中CGATPipelines.PipelineLncRNA.buildFilteredLncRNAGeneSet方法的典型用法代码示例。如果您正苦于以下问题：Python PipelineLncRNA.buildFilteredLncRNAGeneSet方法的具体用法？Python PipelineLncRNA.buildFilteredLncRNAGeneSet怎么用？Python PipelineLncRNA.buildFilteredLncRNAGeneSet使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类CGATPipelines.PipelineLncRNA的用法示例。
在下文中一共展示了PipelineLncRNA.buildFilteredLncRNAGeneSet方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: buildFilteredLncRNAGeneSet
# 需要导入模块: from CGATPipelines import PipelineLncRNA [as 别名]
# 或者: from CGATPipelines.PipelineLncRNA import buildFilteredLncRNAGeneSet [as 别名]
def buildFilteredLncRNAGeneSet(infiles, outfile):
"""
Creates a filtered lncRNA geneset.
This geneset will not include any single exon lncRNA
unless it has been seen previously i.e. it overlaps
a previously identified lncRNA
"""
PipelineLncRNA.buildFilteredLncRNAGeneSet(infiles[0], outfile, infiles[1 : len(infiles)])示例2: buildFilteredLncRNAGeneSet
# 需要导入模块: from CGATPipelines import PipelineLncRNA [as 别名]
# 或者: from CGATPipelines.PipelineLncRNA import buildFilteredLncRNAGeneSet [as 别名]
def buildFilteredLncRNAGeneSet(infiles, outfile):
'''
Creates a filtered lncRNA geneset. That contains previously identified
gene models supplied in contig file.
'''
assert PARAMS["filtering_remove_single_exon"] in ["loci",
"transcripts",
None]
PipelineLncRNA.buildFilteredLncRNAGeneSet(
infiles[0],
outfile,
infiles[1:len(infiles)],
filter_se=PARAMS["filtering_remove_single_exon"])