本文整理汇总了Python中CGATPipelines.PipelineLncRNA.buildCodingGeneSet方法的典型用法代码示例。如果您正苦于以下问题：Python PipelineLncRNA.buildCodingGeneSet方法的具体用法？Python PipelineLncRNA.buildCodingGeneSet怎么用？Python PipelineLncRNA.buildCodingGeneSet使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类CGATPipelines.PipelineLncRNA的用法示例。
在下文中一共展示了PipelineLncRNA.buildCodingGeneSet方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: buildCodingGeneSet
# 需要导入模块: from CGATPipelines import PipelineLncRNA [as 别名]
# 或者: from CGATPipelines.PipelineLncRNA import buildCodingGeneSet [as 别名]
def buildCodingGeneSet(infiles, outfile):
'''
takes the output from cuffcompare of a transcript
assembly and filters for annotated protein coding
genes.
NB "pruned" refers to nomenclature in the transcript
building pipeline - transcripts that appear in at least
two samples.
Because an abinitio assembly will often contain
fragments of known transcripts and describe them as
novel, the default behaviour is to produce a set that
is composed of 'complete' or 'contained' transcripts
i.e. nothing novel. This may underestimate the number
of transcripts that are actually expressed
'''
PipelineLncRNA.buildCodingGeneSet(infiles[0], infiles[1], outfile)