C# Model.getSpecies方法代码示例

本文整理汇总了C#中libsbml.Model.getSpecies方法的典型用法代码示例。如果您正苦于以下问题：C# Model.getSpecies方法的具体用法？C# Model.getSpecies怎么用？C# Model.getSpecies使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类libsbml.Model的用法示例。

在下文中一共展示了Model.getSpecies方法的10个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C#代码示例。

示例1: getSpecies

        /// <summary>
        /// [ SpeciesStruct ]
        /// [[ Id , Name , Compartment , InitialAmount , InitialConcentration , SubstanceUnit , SpatialSizeUnit , Unit , HasOnlySubstanceUnit , BoundaryCondition , Charge , Constant ]]
        /// </summary>
        /// <param name="aSBMLmodel"></param>
        /// <returns></returns>
        public static List<SpeciesStruct> getSpecies(Model aSBMLmodel)
        {
            List<SpeciesStruct> list = new List<SpeciesStruct>();

            ListOfSpecies listOfSpecies = aSBMLmodel.getListOfSpecies();
            for (int i = 0; i < listOfSpecies.size(); i++ )
            {
                Species aSpecies = aSBMLmodel.getSpecies(i);

                string anId_Sp = aSpecies.getId();
                string aName_Sp = aSpecies.getName();
                string aCompartment_Sp = aSpecies.getCompartment();

                double anInitialAmount_Sp = GetInitialAmount(aSpecies);
                double anInitialConcentration_Sp = GetInitialConcentration(aSpecies);

                string aSubstanceUnit_Sp = aSpecies.getSubstanceUnits();
                string aSpatialSizeUnit_Sp = aSpecies.getSpatialSizeUnits();
                string anUnit_Sp = aSpecies.getUnits();
                bool aHasOnlySubstanceUnit_Sp = aSpecies.getHasOnlySubstanceUnits();
                bool aBoundaryCondition_Sp = aSpecies.getBoundaryCondition();
                int aCharge_Sp = aSpecies.getCharge();
                bool aConstant_Sp = aSpecies.getConstant();

                SpeciesStruct species = new SpeciesStruct(
                    anId_Sp,
                    aName_Sp,
                    aCompartment_Sp,
                    anInitialAmount_Sp,
                    anInitialConcentration_Sp,
                    aSubstanceUnit_Sp,
                    aSpatialSizeUnit_Sp,
                    anUnit_Sp,
                    aHasOnlySubstanceUnit_Sp,
                    aBoundaryCondition_Sp,
                    aCharge_Sp,
                    aConstant_Sp);

                list.Add( species );
            }

            return list;
        }

开发者ID:ecell，项目名称:ecell3-ide，代码行数:49，代码来源:SbmlFunctions.cs

示例2: test_Species_parent_add

 public void test_Species_parent_add()
 {
     Species ia = new Species(2,4);
       ia.setId("s");
       ia.setCompartment("c");
       Model m = new Model(2,4);
       m.addSpecies(ia);
       ia = null;
       ListOf lo = m.getListOfSpecies();
       assertTrue( lo == m.getSpecies(0).getParentSBMLObject() );
       assertTrue( m == lo.getParentSBMLObject() );
 }

开发者ID:mgaldzic，项目名称:copasi_api，代码行数:12，代码来源:TestSBMLParentObject.cs

示例3: test_Species_parent_create

 public void test_Species_parent_create()
 {
     Model m = new Model(2,4);
       Species s = m.createSpecies();
       ListOf lo = m.getListOfSpecies();
       assertTrue( lo == s.getParentSBMLObject() );
       assertTrue( lo == m.getSpecies(0).getParentSBMLObject() );
       assertTrue( m == lo.getParentSBMLObject() );
 }

开发者ID:mgaldzic，项目名称:copasi_api，代码行数:9，代码来源:TestSBMLParentObject.cs

示例4: test_Species_ancestor_add

 public void test_Species_ancestor_add()
 {
     Species ia = new Species(2,4);
       Model m = new Model(2,4);
       ia.setId("s");
       ia.setCompartment("c");
       m.addSpecies(ia);
       ia = null;
       ListOf lo = m.getListOfSpecies();
       Species obj = m.getSpecies(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
 }

开发者ID:mgaldzic，项目名称:copasi_api，代码行数:15，代码来源:TestAncestor.cs

示例5: test_Species_ancestor_create

 public void test_Species_ancestor_create()
 {
     Model m = new Model(2,4);
       Species s = m.createSpecies();
       ListOf lo = m.getListOfSpecies();
       assertTrue( s.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( s.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( s.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( s.getAncestorOfType(libsbml.SBML_EVENT) == null );
       Species obj = m.getSpecies(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
 }

开发者ID:mgaldzic，项目名称:copasi_api，代码行数:15，代码来源:TestAncestor.cs

示例6: test_ReadSBML_metaid

 public void test_ReadSBML_metaid()
 {
     SBase sb;
       string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" +
     "  <functionDefinition metaid='fd'/>" +
     "</listOfFunctionDefinitions>" +
     "<listOfUnitDefinitions>" +
     "  <unitDefinition metaid='ud'/>" +
     "</listOfUnitDefinitions>" +
     "<listOfCompartments>" +
     "  <compartment metaid='c'/>" +
     "</listOfCompartments>" +
     "<listOfSpecies>" +
     "  <species metaid='s'/>" +
     "</listOfSpecies>" +
     "<listOfParameters>" +
     "  <parameter metaid='p'/>" +
     "</listOfParameters>" +
     "<listOfRules>" +
     "  <rateRule metaid='rr'/>" +
     "</listOfRules>" +
     "<listOfReactions>" +
     "  <reaction metaid='rx'/>" +
     "</listOfReactions>" +
     "<listOfEvents>" +
     " <event metaid='e'/>" +
     "</listOfEvents>");
       D = libsbml.readSBMLFromString(s);
       M = D.getModel();
       assertTrue( M != null );
       sb = M.getFunctionDefinition(0);
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "fd" == sb.getMetaId() ));
       sb = M.getUnitDefinition(0);
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "ud" == sb.getMetaId() ));
       sb = M.getCompartment(0);
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "c" == sb.getMetaId() ));
       sb = M.getSpecies(0);
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "s" == sb.getMetaId() ));
       sb = M.getParameter(0);
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "p" == sb.getMetaId() ));
       sb = M.getRule(0);
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "rr" == sb.getMetaId() ));
       sb = M.getReaction(0);
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "rx" == sb.getMetaId() ));
       sb = M.getEvent(0);
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "e" == sb.getMetaId() ));
 }

开发者ID:mgaldzic，项目名称:copasi_api，代码行数:55，代码来源:TestReadSBML.cs

示例7: test_ReadSBML_Specie_defaults

 public void test_ReadSBML_Specie_defaults()
 {
     Species sp;
       string s = wrapSBML_L1v1("<listOfSpecie>" +
     "  <specie name='Glucose' compartment='cell' initialAmount='1.0'/>" +
     "</listOfSpecie>");
       D = libsbml.readSBMLFromString(s);
       M = D.getModel();
       assertTrue( M.getNumSpecies() == 1 );
       sp = M.getSpecies(0);
       assertTrue((  "Glucose"  == sp.getId() ));
       assertTrue((  "cell"     == sp.getCompartment() ));
       assertTrue( sp.getInitialAmount() == 1.0 );
       assertTrue( sp.getBoundaryCondition() == false );
       assertTrue( sp.isSetInitialAmount() == true );
       assertTrue( sp.isSetCharge() == false );
 }

开发者ID:mgaldzic，项目名称:copasi_api，代码行数:17，代码来源:TestReadSBML.cs

示例8: test_ReadSBML_Species_L2_defaults

 public void test_ReadSBML_Species_L2_defaults()
 {
     Species sp;
       string s = wrapSBML_L2v1("<listOfSpecies>" +
     "  <species id='Glucose_6_P' compartment='cell'/>" +
     "</listOfSpecies>");
       D = libsbml.readSBMLFromString(s);
       M = D.getModel();
       assertTrue( M.getNumSpecies() == 1 );
       sp = M.getSpecies(0);
       assertEquals( true, sp.isSetId() );
       assertEquals( false, sp.isSetName() );
       assertEquals( true, sp.isSetCompartment() );
       assertEquals( false, sp.isSetInitialAmount() );
       assertEquals( false, sp.isSetInitialConcentration() );
       assertEquals( false, sp.isSetSubstanceUnits() );
       assertEquals( false, sp.isSetSpatialSizeUnits() );
       assertEquals( false, sp.isSetCharge() );
       assertTrue((  "Glucose_6_P"  == sp.getId() ));
       assertTrue((  "cell"         == sp.getCompartment() ));
       assertTrue( sp.getHasOnlySubstanceUnits() == false );
       assertTrue( sp.getBoundaryCondition() == false );
       assertTrue( sp.getConstant() == false );
 }

开发者ID:mgaldzic，项目名称:copasi_api，代码行数:24，代码来源:TestReadSBML.cs

示例9: test_ReadSBML_Species_L2_1

 public void test_ReadSBML_Species_L2_1()
 {
     Species sp;
       string s = wrapSBML_L2v1("<listOfSpecies>" +
     "  <species id='Glucose' compartment='cell' initialConcentration='4.1'" +
     "           substanceUnits='item' spatialSizeUnits='volume'" +
     "           boundaryCondition='true' charge='6' constant='true'/>" +
     "</listOfSpecies>");
       D = libsbml.readSBMLFromString(s);
       M = D.getModel();
       assertTrue( M.getNumSpecies() == 1 );
       sp = M.getSpecies(0);
       assertEquals( true, sp.isSetId() );
       assertEquals( false, sp.isSetName() );
       assertEquals( true, sp.isSetCompartment() );
       assertEquals( false, sp.isSetInitialAmount() );
       assertEquals( true, sp.isSetInitialConcentration() );
       assertEquals( true, sp.isSetSubstanceUnits() );
       assertEquals( true, sp.isSetSpatialSizeUnits() );
       assertEquals( true, sp.isSetCharge() );
       assertTrue((  "Glucose"  == sp.getId() ));
       assertTrue((  "cell"     == sp.getCompartment() ));
       assertTrue((  "item"     == sp.getSubstanceUnits() ));
       assertTrue((  "volume"   == sp.getSpatialSizeUnits() ));
       assertTrue( sp.getInitialConcentration() == 4.1 );
       assertTrue( sp.getHasOnlySubstanceUnits() == false );
       assertTrue( sp.getBoundaryCondition() == true );
       assertTrue( sp.getCharge() == 6 );
       assertTrue( sp.getConstant() == true );
 }

开发者ID:mgaldzic，项目名称:copasi_api，代码行数:30，代码来源:TestReadSBML.cs

示例10: test_ReadSBML_Species

 public void test_ReadSBML_Species()
 {
     Species sp;
       string s = wrapSBML_L1v2("<listOfSpecies>" +
     "  <species name='Glucose' compartment='cell' initialAmount='4.1'" +
     "           units='volume' boundaryCondition='false' charge='6'/>" +
     "</listOfSpecies>");
       D = libsbml.readSBMLFromString(s);
       M = D.getModel();
       assertTrue( M.getNumSpecies() == 1 );
       sp = M.getSpecies(0);
       assertTrue((  "Glucose"  == sp.getId() ));
       assertTrue((  "cell"     == sp.getCompartment() ));
       assertTrue((  "volume"   == sp.getUnits() ));
       assertTrue( sp.getInitialAmount() == 4.1 );
       assertTrue( sp.getBoundaryCondition() == false );
       assertTrue( sp.getCharge() == 6 );
       assertTrue( sp.isSetInitialAmount() == true );
       assertTrue( sp.isSetCharge() == true );
 }

开发者ID:mgaldzic，项目名称:copasi_api，代码行数:20，代码来源:TestReadSBML.cs

注：本文中的libsbml.Model.getSpecies方法示例由纯净天空整理自Github/MSDocs等开源代码及文档管理平台，相关代码片段筛选自各路编程大神贡献的开源项目，源码版权归原作者所有，传播和使用请参考对应项目的License；未经允许，请勿转载。