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C# Model.createSpecies方法代码示例

本文整理汇总了C#中libsbml.Model.createSpecies方法的典型用法代码示例。如果您正苦于以下问题:C# Model.createSpecies方法的具体用法?C# Model.createSpecies怎么用?C# Model.createSpecies使用的例子?那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在libsbml.Model的用法示例。


在下文中一共展示了Model.createSpecies方法的6个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的C#代码示例。

示例1: test_Model_createSpecies

 public void test_Model_createSpecies()
 {
     Model m = new  Model(2,2);
       Species p = m.createSpecies();
       assertTrue( m.getNumSpecies() == 1 );
       assertTrue( (p).getLevel() == 2 );
       assertTrue( (p).getVersion() == 2 );
       m = null;
 }
开发者ID:mgaldzic,项目名称:copasi_api,代码行数:9,代码来源:TestModel_newSetters.cs

示例2: test_Model_L1V1

 public void test_Model_L1V1()
 {
     Model m = new Model(1,1);
       assertEquals( false, (m.hasRequiredElements()) );
       m.createCompartment();
       assertEquals( false, (m.hasRequiredElements()) );
       m.createSpecies();
       assertEquals( false, (m.hasRequiredElements()) );
       m.createReaction();
       assertEquals( true, m.hasRequiredElements() );
       m = null;
 }
开发者ID:mgaldzic,项目名称:copasi_api,代码行数:12,代码来源:TestRequiredElements.cs

示例3: test_Species_parent_create

 public void test_Species_parent_create()
 {
     Model m = new Model(2,4);
       Species s = m.createSpecies();
       ListOf lo = m.getListOfSpecies();
       assertTrue( lo == s.getParentSBMLObject() );
       assertTrue( lo == m.getSpecies(0).getParentSBMLObject() );
       assertTrue( m == lo.getParentSBMLObject() );
 }
开发者ID:mgaldzic,项目名称:copasi_api,代码行数:9,代码来源:TestSBMLParentObject.cs

示例4: createSpecies

        private static void createSpecies(EcellObject anEml, Model aSBMLModel)
        {
            string aCurrentCompartment = getCurrentCompartment( anEml.ParentSystemID );
            Compartment aCurrentCompartmentObj = aSBMLModel.getCompartment( aCurrentCompartment );

            if( aCurrentCompartment == "SBMLParameter" )
            {
                // ------------------------
                // create Parameter object
                // ------------------------
                Parameter aParameter = aSBMLModel.createParameter();

                string aParameterID;
                if ( ID_Namespace.Contains(anEml.LocalID) == false )
                    aParameterID = anEml.LocalID;
                else
                    aParameterID = "SBMLParamter__" + anEml.LocalID;

                // set Paramter ID to Id namespace
                ID_Namespace.Add( aParameterID );

                // set Parameter ID
                if (aSBMLModel.getLevel() == 1)
                    aParameter.setName( aParameterID );

                else if (aSBMLModel.getLevel() == 2)
                    aParameter.setId( aParameterID );

                // set Parameter Name, Value and Constant
                foreach(EcellData aProperty in anEml.Value)
                {
                    string aFullPN = anEml.FullID + ":" + aProperty.Name;

                    // set Parameter Name
                    if ( aProperty.Name == "Name" )
                    {
                        if (aSBMLModel.getLevel() == 1)
                        {
                        }
                        if (aSBMLModel.getLevel() == 2)
                        {
                            aParameter.setName( (string)aProperty.Value );
                        }
                    }

                    // set Parameter Value
                    else if ( aProperty.Name == "Value" )
                    {
                        aParameter.setValue( (double)aProperty.Value );
                    }
                    // set Constant
                    else if ( aProperty.Name == "Fixed" )
                    {
                        aParameter.setConstant(System.Convert.ToBoolean((int)aProperty.Value));
                    }
                    else
                    {
                        Trace.WriteLine("Unrepresentable property; " + aFullPN);
                        //throw new EcellException("Unrepresentable property; " + aFullPN);
                    }
                }
            }
            else
            {
                if( anEml.LocalID != "SIZE" && anEml.LocalID != "Dimensions" )
                {
                    // create Species object
                    Species aSpecies = aSBMLModel.createSpecies();

                    // set Species ID
                    string aSpeciesID;
                    if ( ID_Namespace.Contains( anEml.LocalID) == false )
                        aSpeciesID = anEml.LocalID;
                    else
                    {
                        if ( !anEml.ParentSystemID.Equals("/") )
                            aSpeciesID = anEml.LocalID;
                        else
                            aSpeciesID = anEml.LocalID;
                    }

                    ID_Namespace.Add( aSpeciesID );

                    if (aSBMLModel.getLevel() == 1)
                        aSpecies.setName( aSpeciesID );
                    if (aSBMLModel.getLevel() == 2)
                        aSpecies.setId( aSpeciesID );

                    // set Compartment of Species
                    if( aCurrentCompartment == "" )
                        aSpecies.setCompartment( "default" );
                    else
                        aSpecies.setCompartment( aCurrentCompartment );

                    // set Species Name, Value and Constant
                    foreach(EcellData aProperty in anEml.Value)
                    {
                        string aFullPN = anEml.FullID + ":" + aProperty.Name;

                        // set Species Name
//.........这里部分代码省略.........
开发者ID:ecell,项目名称:ecell3-ide,代码行数:101,代码来源:EML2SBML.cs

示例5: test_create_l1v1_units

 public void test_create_l1v1_units()
 {
     SBMLDocument d;
       Model m;
       Compartment c;
       KineticLaw kl;
       Parameter p;
       Reaction r;
       Species s;
       SpeciesReference sr;
       Unit u;
       UnitDefinition ud;
       d = new  SBMLDocument();
       m = new  Model(2,4);
       d.setModel(m);
       ud = m.createUnitDefinition();
       ud.setName( "substance");
       u = m.createUnit();
       u.setKind(libsbml.UNIT_KIND_MOLE);
       u.setScale(-3);
       ud = m.createUnitDefinition();
       ud.setName( "mls");
       u = m.createUnit();
       u.setKind(libsbml.UNIT_KIND_MOLE);
       u.setScale(-3);
       u = m.createUnit();
       u.setKind(libsbml.UNIT_KIND_LITER);
       u.setExponent(-1);
       u = m.createUnit();
       u.setKind(libsbml.UNIT_KIND_SECOND);
       u.setExponent(-1);
       c = m.createCompartment();
       c.setName( "cell");
       s = m.createSpecies();
       s.setName( "x0");
       s.setCompartment( "cell");
       s.setInitialAmount(1);
       s = m.createSpecies();
       s.setName( "x1");
       s.setCompartment( "cell");
       s.setInitialAmount(1);
       s = m.createSpecies();
       s.setName( "s1");
       s.setCompartment( "cell");
       s.setInitialAmount(1);
       s = m.createSpecies();
       s.setName( "s2");
       s.setCompartment( "cell");
       s.setInitialAmount(1);
       p = m.createParameter();
       p.setName( "vm");
       p.setUnits( "mls");
       p.setValue(2);
       p = m.createParameter();
       p.setName( "km");
       p.setValue(2);
       r = m.createReaction();
       r.setName( "v1");
       sr = m.createReactant();
       sr.setSpecies( "x0");
       sr = m.createProduct();
       sr.setSpecies( "s1");
       kl = m.createKineticLaw();
       kl.setFormula( "(vm * s1)/(km + s1)");
       r = m.createReaction();
       r.setName( "v2");
       sr = m.createReactant();
       sr.setSpecies( "s1");
       sr = m.createProduct();
       sr.setSpecies( "s2");
       kl = m.createKineticLaw();
       kl.setFormula( "(vm * s2)/(km + s2)");
       r = m.createReaction();
       r.setName( "v3");
       sr = m.createReactant();
       sr.setSpecies( "s2");
       sr = m.createProduct();
       sr.setSpecies( "x1");
       kl = m.createKineticLaw();
       kl.setFormula( "(vm * s1)/(km + s1)");
       d = null;
 }
开发者ID:mgaldzic,项目名称:copasi_api,代码行数:82,代码来源:TestReadFromFile2.cs

示例6: test_Species_ancestor_create

 public void test_Species_ancestor_create()
 {
     Model m = new Model(2,4);
       Species s = m.createSpecies();
       ListOf lo = m.getListOfSpecies();
       assertTrue( s.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( s.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( s.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( s.getAncestorOfType(libsbml.SBML_EVENT) == null );
       Species obj = m.getSpecies(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
 }
开发者ID:mgaldzic,项目名称:copasi_api,代码行数:15,代码来源:TestAncestor.cs


注:本文中的libsbml.Model.createSpecies方法示例由纯净天空整理自Github/MSDocs等开源代码及文档管理平台,相关代码片段筛选自各路编程大神贡献的开源项目,源码版权归原作者所有,传播和使用请参考对应项目的License;未经允许,请勿转载。