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C# Model.createReactant方法代码示例

本文整理汇总了C#中libsbml.Model.createReactant方法的典型用法代码示例。如果您正苦于以下问题:C# Model.createReactant方法的具体用法?C# Model.createReactant怎么用?C# Model.createReactant使用的例子?那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在libsbml.Model的用法示例。


在下文中一共展示了Model.createReactant方法的5个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的C#代码示例。

示例1: test_Model_createReactant

 public void test_Model_createReactant()
 {
     Model m = new  Model(2,2);
       Reaction p = m.createReaction();
       SpeciesReference sr = m.createReactant();
       assertTrue( p.getNumReactants() == 1 );
       assertTrue( (sr).getLevel() == 2 );
       assertTrue( (sr).getVersion() == 2 );
       m = null;
 }
开发者ID:mgaldzic,项目名称:copasi_api,代码行数:10,代码来源:TestModel_newSetters.cs

示例2: test_SpeciesReference_Reactant_parent_create_model

 public void test_SpeciesReference_Reactant_parent_create_model()
 {
     Model m = new Model(2,4);
       Reaction r = m.createReaction();
       SpeciesReference sr = m.createReactant();
       ListOf lo = r.getListOfReactants();
       assertTrue( lo == r.getReactant(0).getParentSBMLObject() );
       assertTrue( lo == sr.getParentSBMLObject() );
       assertTrue( r == lo.getParentSBMLObject() );
 }
开发者ID:mgaldzic,项目名称:copasi_api,代码行数:10,代码来源:TestSBMLParentObject.cs

示例3: test_create_l1v1_units

 public void test_create_l1v1_units()
 {
     SBMLDocument d;
       Model m;
       Compartment c;
       KineticLaw kl;
       Parameter p;
       Reaction r;
       Species s;
       SpeciesReference sr;
       Unit u;
       UnitDefinition ud;
       d = new  SBMLDocument();
       m = new  Model(2,4);
       d.setModel(m);
       ud = m.createUnitDefinition();
       ud.setName( "substance");
       u = m.createUnit();
       u.setKind(libsbml.UNIT_KIND_MOLE);
       u.setScale(-3);
       ud = m.createUnitDefinition();
       ud.setName( "mls");
       u = m.createUnit();
       u.setKind(libsbml.UNIT_KIND_MOLE);
       u.setScale(-3);
       u = m.createUnit();
       u.setKind(libsbml.UNIT_KIND_LITER);
       u.setExponent(-1);
       u = m.createUnit();
       u.setKind(libsbml.UNIT_KIND_SECOND);
       u.setExponent(-1);
       c = m.createCompartment();
       c.setName( "cell");
       s = m.createSpecies();
       s.setName( "x0");
       s.setCompartment( "cell");
       s.setInitialAmount(1);
       s = m.createSpecies();
       s.setName( "x1");
       s.setCompartment( "cell");
       s.setInitialAmount(1);
       s = m.createSpecies();
       s.setName( "s1");
       s.setCompartment( "cell");
       s.setInitialAmount(1);
       s = m.createSpecies();
       s.setName( "s2");
       s.setCompartment( "cell");
       s.setInitialAmount(1);
       p = m.createParameter();
       p.setName( "vm");
       p.setUnits( "mls");
       p.setValue(2);
       p = m.createParameter();
       p.setName( "km");
       p.setValue(2);
       r = m.createReaction();
       r.setName( "v1");
       sr = m.createReactant();
       sr.setSpecies( "x0");
       sr = m.createProduct();
       sr.setSpecies( "s1");
       kl = m.createKineticLaw();
       kl.setFormula( "(vm * s1)/(km + s1)");
       r = m.createReaction();
       r.setName( "v2");
       sr = m.createReactant();
       sr.setSpecies( "s1");
       sr = m.createProduct();
       sr.setSpecies( "s2");
       kl = m.createKineticLaw();
       kl.setFormula( "(vm * s2)/(km + s2)");
       r = m.createReaction();
       r.setName( "v3");
       sr = m.createReactant();
       sr.setSpecies( "s2");
       sr = m.createProduct();
       sr.setSpecies( "x1");
       kl = m.createKineticLaw();
       kl.setFormula( "(vm * s1)/(km + s1)");
       d = null;
 }
开发者ID:mgaldzic,项目名称:copasi_api,代码行数:82,代码来源:TestReadFromFile2.cs

示例4: createReaction


//.........这里部分代码省略.........
                        // set KineticLaw Formula
                        if ( aDelayFlag == false )
                            aKineticLaw.setFormula( anExpression );
                        else
                        {
                            ASTNode anASTNode = libsbml.libsbml.parseFormula( anExpression );
                            anASTNode = setDelayType( anASTNode );

                            aKineticLaw.setMath( anASTNode );
                        }
                    }
                    // set VariableReference property ( SpeciesReference )
                    else if ( aProperty.Name == "VariableReferenceList" )
                    {
                        // make a flag. Because SBML model is defined
                        // both Product and Reactant. This flag is required
                        // in order to judge whether the Product and the
                        // Reactant are defined.

                        bool aReactantFlag = false;
                        bool aProductFlag = false;

                        foreach(EcellReference aVariableReference in aVariableReferenceList)
                        {
                            // --------------------------------
                            // add Reactants to Reaction object
                            // --------------------------------
                            if ( aVariableReference.Coefficient < 0 )
                            {
                                // change the Reactant Flag
                                aReactantFlag = true;

                                // create Reactant object
                                SpeciesReference aReactant = aSBMLModel.createReactant();

                                // set Species Id to Reactant object
                                string aSpeciesReferenceId = getVariableReferenceId
                                                      ( aVariableReference.FullID,
                                                        aProcess.ParentSystemID );

                                aReactant.setSpecies( aSpeciesReferenceId );

                                // set Stoichiometry
                                aReactant.setStoichiometry( -aVariableReference.Coefficient );
                            }
                            // -------------------------------
                            // add Products to Reaction object
                            // -------------------------------
                            else if ( aVariableReference.Coefficient > 0 )
                            {
                                // change the Product Flag
                                aProductFlag = true;

                                // create Product object
                                SpeciesReference aProduct = aSBMLModel.createProduct();

                                // set Species Id
                                string aSpeciesReferenceId = getVariableReferenceId
                                                      ( aVariableReference.FullID,
                                                        aProcess.ParentSystemID );

                                aProduct.setSpecies( aSpeciesReferenceId );

                                // set Stoichiometry
                                aProduct.setStoichiometry( aVariableReference.Coefficient );
                            }
开发者ID:ecell,项目名称:ecell3-ide,代码行数:67,代码来源:EML2SBML.cs

示例5: test_SpeciesReference_Reactant_ancestor_create_model

 public void test_SpeciesReference_Reactant_ancestor_create_model()
 {
     Model m = new Model(2,4);
       Reaction r = m.createReaction();
       SpeciesReference sr = m.createReactant();
       ListOf lo = r.getListOfReactants();
       assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r );
       assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( sr.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
       SpeciesReference obj = r.getReactant(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
 }
开发者ID:mgaldzic,项目名称:copasi_api,代码行数:18,代码来源:TestAncestor.cs


注:本文中的libsbml.Model.createReactant方法示例由纯净天空整理自Github/MSDocs等开源代码及文档管理平台,相关代码片段筛选自各路编程大神贡献的开源项目,源码版权归原作者所有,传播和使用请参考对应项目的License;未经允许,请勿转载。