本文整理汇总了C#中libsbml.Model.createKineticLaw方法的典型用法代码示例。如果您正苦于以下问题：C# Model.createKineticLaw方法的具体用法？C# Model.createKineticLaw怎么用？C# Model.createKineticLaw使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类libsbml.Model的用法示例。
在下文中一共展示了Model.createKineticLaw方法的6个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C#代码示例。
示例1: test_Model_createKineticLawParameters
public void test_Model_createKineticLawParameters()
{
Model m = new Model(2,2);
Reaction r = m.createReaction();
KineticLaw kl = m.createKineticLaw();
Parameter p = m.createKineticLawParameter();
assertTrue( r.isSetKineticLaw() == true );
assertTrue( kl.getNumParameters() == 1 );
assertTrue( (p).getLevel() == 2 );
assertTrue( (p).getVersion() == 2 );
m = null;
}示例2: test_Model_createKineticLaw
public void test_Model_createKineticLaw()
{
Model m = new Model(2,2);
Reaction p = m.createReaction();
KineticLaw kl = m.createKineticLaw();
assertTrue( p.isSetKineticLaw() == true );
assertTrue( (kl).getLevel() == 2 );
assertTrue( (kl).getVersion() == 2 );
m = null;
}示例3: test_KineticLaw_Parameter_parent_create_model
public void test_KineticLaw_Parameter_parent_create_model()
{
Model m = new Model(2,4);
Reaction r = m.createReaction();
KineticLaw kl = m.createKineticLaw();
Parameter p = m.createKineticLawParameter();
assertTrue( kl.getNumParameters() == 1 );
ListOfParameters lop = kl.getListOfParameters();
assertTrue( r == kl.getParentSBMLObject() );
assertTrue( kl == lop.getParentSBMLObject() );
assertTrue( lop == p.getParentSBMLObject() );
assertTrue( lop == kl.getParameter(0).getParentSBMLObject() );
kl = null;
}示例4: createReaction
private static void createReaction(EcellObject anEml, Model aSBMLModel)
{
EcellProcess aProcess = (EcellProcess)anEml;
List<EcellReference> aVariableReferenceList = aProcess.ReferenceList;
string anExpression = aProcess.Expression;
// ------------------
// make Rule object
// ------------------
if ( anEml.ParentSystemID == "/SBMLRule" )
{
// get Process Class
anExpression = convertExpression(
anExpression,
aVariableReferenceList,
aProcess.ParentSystemID);
if( aProcess.Classname == ProcessConstants.ExpressionAlgebraicProcess )
{
// create AlgebraicRule object
AlgebraicRule anAlgebraicRule = aSBMLModel.createAlgebraicRule();
// set AlgebraicRule Formula
anAlgebraicRule.setFormula( anExpression );
}
else if( aProcess.Classname == ProcessConstants.ExpressionAssignmentProcess )
{
foreach(EcellReference aVariableReference in aVariableReferenceList)
{
if ( aVariableReference.Coefficient != 0 )
{
// create AssignmentRule object
AssignmentRule anAssignmentRule =aSBMLModel.createAssignmentRule();
// set AssignmentRule Formula
anAssignmentRule.setFormula( aVariableReference.Coefficient.ToString() + "* ( " + anExpression + ")" );
string aVariableID = getVariableReferenceId( aVariableReference.FullID, aProcess.ParentSystemID );
anAssignmentRule.setVariable( aVariableID );
}
}
}
else if( aProcess.Classname == ProcessConstants.ExpressionFluxProcess )
{
foreach(EcellReference aVariableReference in aVariableReferenceList)
{
if ( aVariableReference.Coefficient != 0 )
{
// create AssignmentRule object
RateRule aRateRule = aSBMLModel.createRateRule();
// set AssignmentRule Formula
aRateRule.setFormula( aVariableReference.Coefficient + "* ( " + anExpression + ")" );
string aVariableID = getVariableReferenceId( aVariableReference.FullID, aProcess.ParentSystemID );
aRateRule.setVariable( aVariableID );
}
}
}
else
{
throw new EcellException("The type of Process must be Algebraic, Assignment, Flux Processes: " + aProcess.Key);
}
}
// ----------------------
// make Reaction object
// ----------------------
else
{
// create Parameter object
Reaction aReaction = aSBMLModel.createReaction();
// create KineticLaw Object
KineticLaw aKineticLaw = aSBMLModel.createKineticLaw();
// set Reaction ID
if (aSBMLModel.getLevel() == 1)
aReaction.setName( anEml.LocalID );
if (aSBMLModel.getLevel() == 2)
aReaction.setId( anEml.LocalID );
foreach(EcellData aProperty in anEml.Value)
{
if (!aProperty.Loadable)
continue;
string aFullPN = aProcess.FullID + ":" + aProperty.Name;
// set Name property ( Name )
if ( aProperty.Name == "Name" )
{
// set Reaction Name
if (aSBMLModel.getLevel() == 1)
{
}
else if (aSBMLModel.getLevel() == 2)
aReaction.setName( (string)aProperty.Value );
}
// set Expression property ( KineticLaw Formula )
else if ( aProperty.Name == "Expression")
//.........这里部分代码省略.........
示例5: test_create_l1v1_units
public void test_create_l1v1_units()
{
SBMLDocument d;
Model m;
Compartment c;
KineticLaw kl;
Parameter p;
Reaction r;
Species s;
SpeciesReference sr;
Unit u;
UnitDefinition ud;
d = new SBMLDocument();
m = new Model(2,4);
d.setModel(m);
ud = m.createUnitDefinition();
ud.setName( "substance");
u = m.createUnit();
u.setKind(libsbml.UNIT_KIND_MOLE);
u.setScale(-3);
ud = m.createUnitDefinition();
ud.setName( "mls");
u = m.createUnit();
u.setKind(libsbml.UNIT_KIND_MOLE);
u.setScale(-3);
u = m.createUnit();
u.setKind(libsbml.UNIT_KIND_LITER);
u.setExponent(-1);
u = m.createUnit();
u.setKind(libsbml.UNIT_KIND_SECOND);
u.setExponent(-1);
c = m.createCompartment();
c.setName( "cell");
s = m.createSpecies();
s.setName( "x0");
s.setCompartment( "cell");
s.setInitialAmount(1);
s = m.createSpecies();
s.setName( "x1");
s.setCompartment( "cell");
s.setInitialAmount(1);
s = m.createSpecies();
s.setName( "s1");
s.setCompartment( "cell");
s.setInitialAmount(1);
s = m.createSpecies();
s.setName( "s2");
s.setCompartment( "cell");
s.setInitialAmount(1);
p = m.createParameter();
p.setName( "vm");
p.setUnits( "mls");
p.setValue(2);
p = m.createParameter();
p.setName( "km");
p.setValue(2);
r = m.createReaction();
r.setName( "v1");
sr = m.createReactant();
sr.setSpecies( "x0");
sr = m.createProduct();
sr.setSpecies( "s1");
kl = m.createKineticLaw();
kl.setFormula( "(vm * s1)/(km + s1)");
r = m.createReaction();
r.setName( "v2");
sr = m.createReactant();
sr.setSpecies( "s1");
sr = m.createProduct();
sr.setSpecies( "s2");
kl = m.createKineticLaw();
kl.setFormula( "(vm * s2)/(km + s2)");
r = m.createReaction();
r.setName( "v3");
sr = m.createReactant();
sr.setSpecies( "s2");
sr = m.createProduct();
sr.setSpecies( "x1");
kl = m.createKineticLaw();
kl.setFormula( "(vm * s1)/(km + s1)");
d = null;
}示例6: test_KineticLaw_Parameter_ancestor_create_model
public void test_KineticLaw_Parameter_ancestor_create_model()
{
Model m = new Model(2,4);
Reaction r = m.createReaction();
KineticLaw kl = m.createKineticLaw();
Parameter p = m.createKineticLawParameter();
assertTrue( kl.getNumParameters() == 1 );
ListOfParameters lop = kl.getListOfParameters();
assertTrue( p.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl );
assertTrue( p.getAncestorOfType(libsbml.SBML_LIST_OF) == lop );
assertTrue( p.getAncestorOfType(libsbml.SBML_REACTION) == r );
assertTrue( p.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( p.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( p.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
Parameter obj = kl.getParameter(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lop );
assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r );
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
kl = null;
}