C++ CLayout::addCompartmentGlyph方法代码示例

//static
CLayout * SBMLDocumentLoader::createLayout(const Layout & sbmlLayout,
    const std::map<std::string, std::string> & modelmap,
    std::map<std::string, std::string> & layoutmap
#ifdef USE_CRENDER_EXTENSION
    , const std::map<std::string, std::string>& globalIdToKeyMap
    //,const std::map<std::string,std::map<std::string,std::string> >& globalColorIdToKeyMapMap
    //,const std::map<std::string,std::map<std::string,std::string> >& globalGradientIdToKeyMapMap
    //,const std::map<std::string,std::map<std::string,std::string> >& globalLineEndingIdToKeyMapMap
#endif /* USE_CRENDER_EXTENSION */
    , const CCopasiContainer * pParent
                                          )
{
  CLayout* layout = new CLayout(sbmlLayout, layoutmap, pParent);

  //compartments
  unsigned C_INT32 i, iMax = sbmlLayout.getListOfCompartmentGlyphs()->size();

  for (i = 0; i < iMax; ++i)
    {
      const CompartmentGlyph* tmp
        = dynamic_cast<const CompartmentGlyph*>(sbmlLayout.getListOfCompartmentGlyphs()->get(i));

      if (tmp)
        layout->addCompartmentGlyph(new CLCompartmentGlyph(*tmp, modelmap, layoutmap));
    }

  //species
  iMax = sbmlLayout.getListOfSpeciesGlyphs()->size();

  for (i = 0; i < iMax; ++i)
    {
      const SpeciesGlyph* tmp
        = dynamic_cast<const SpeciesGlyph*>(sbmlLayout.getListOfSpeciesGlyphs()->get(i));

      if (tmp)
        layout->addMetaboliteGlyph(new CLMetabGlyph(*tmp, modelmap, layoutmap));
    }

  //reactions
  iMax = sbmlLayout.getListOfReactionGlyphs()->size();

  for (i = 0; i < iMax; ++i)
    {
      const ReactionGlyph* tmp
        = dynamic_cast<const ReactionGlyph*>(sbmlLayout.getListOfReactionGlyphs()->get(i));

      if (tmp)
        layout->addReactionGlyph(new CLReactionGlyph(*tmp, modelmap, layoutmap));
    }

  //text
  iMax = sbmlLayout.getListOfTextGlyphs()->size();

  for (i = 0; i < iMax; ++i)
    {
      const TextGlyph* tmp
        = dynamic_cast<const TextGlyph*>(sbmlLayout.getListOfTextGlyphs()->get(i));

      if (tmp)
        layout->addTextGlyph(new CLTextGlyph(*tmp, modelmap, layoutmap));
    }

  //additional
  iMax = sbmlLayout.getListOfAdditionalGraphicalObjects()->size();

  for (i = 0; i < iMax; ++i)
    {
      const GraphicalObject* graphical
        = dynamic_cast<const GraphicalObject*>(sbmlLayout.getListOfAdditionalGraphicalObjects()->get(i));

      if (graphical)
        layout->addGeneralGlyph(new CLGeneralGlyph(*graphical, modelmap, layoutmap));
    }

  //second pass text (the text glyph can refer to other glyphs. These references can)
  //only be resolved after all glyphs are created).
  iMax = sbmlLayout.getListOfTextGlyphs()->size();

  for (i = 0; i < iMax; ++i)
    {
      const TextGlyph* tmp
        = dynamic_cast<const TextGlyph*>(sbmlLayout.getListOfTextGlyphs()->get(i));

      if (tmp)
        postprocessTextGlyph(*tmp, layoutmap);
    }

#ifdef USE_CRENDER_EXTENSION
  RenderLayoutPlugin* rlPlugin = (RenderLayoutPlugin*) sbmlLayout.getPlugin("render");
  assert(rlPlugin != NULL);

  // import the local render information
  iMax = rlPlugin->getNumLocalRenderInformationObjects();
  std::map<std::string, std::string> idToKeyMap;
  CLLocalRenderInformation* pLRI = NULL;

  //std::map<std::string,std::string> colorIdToKeyMap;
  //std::map<std::string,std::string> gradientIdToKeyMap;
  //std::map<std::string,std::string> lineEndingIdToKeyMap;
//.........这里部分代码省略.........

//.........这里部分代码省略.........
            }
          else
            {
              //find the existing metab glyph
              std::map<const CMetab*, CLMetabGlyph*>::const_iterator mmIt;
              mmIt = metabMap.find(pMetab);

              if (mmIt != metabMap.end())
                pMetabGlyph = mmIt->second;

              role = CLMetabReferenceGlyph::MODIFIER;
            }

          if (!pMetabGlyph)
            continue;

          CLMetabReferenceGlyph* pRefGlyph = new CLMetabReferenceGlyph;
          //pResult->setModelObjectKey(modelobjectkey);
          pRefGlyph->setMetabGlyphKey(pMetabGlyph->getKey());
          pRefGlyph->setRole(role);
          pReactionGlyph->addMetabReferenceGlyph(pRefGlyph);
        } //modifiers
    } //reactions

  //rules
  size_t i;

  for (i = 0; i < pResult->getListOfMetaboliteGlyphs().size(); ++i)
    {
      const CLMetabGlyph* pMetabGlyph = &pResult->getListOfMetaboliteGlyphs()[i];
      const CMetab* pMetab = dynamic_cast<const CMetab*>(pMetabGlyph->getModelObject());

      if (!pMetab)
        continue;

      if (pMetab->getStatus() == CModelEntity::Status::ODE || pMetab->getStatus() == CModelEntity::Status::ASSIGNMENT)
        {
          CLGeneralGlyph* pGG = new CLGeneralGlyph;
          pGG->setDimensions(CLDimensions(10, 10));
          pGG->setObjectRole("rule");

          pResult->addGeneralGlyph(pGG);

          CLReferenceGlyph* pRefGlyph = new CLReferenceGlyph;
          pRefGlyph->setDimensions(CLDimensions(10, 10));
          pRefGlyph->setTargetGlyphKey(pMetabGlyph->getKey());
          pRefGlyph->setRole("rule connection");
          pGG->addReferenceGlyph(pRefGlyph);
        }
    }

  //after all other glyphs are created, create the compartment glyphs
  double xxx = 0;
  std::set<const CCompartment*>::const_iterator compIt;

  for (compIt = compartments.begin(); compIt != compartments.end(); ++compIt)
    {
      double compSize = 10000;
      std::map<const CCompartment*, CompartmentInfo>::const_iterator ccIt;
      ccIt = compInfo.find(*compIt);

      if (ccIt != compInfo.end())
        {
          //some glyphs are placed inside this compartment glyph
          compSize = ccIt->second.mAreaSum * 40;
        }

      //create the glyph
      CLCompartmentGlyph* pCompGlyph = new CLCompartmentGlyph;
      pCompGlyph->setModelObjectKey((*compIt)->getKey());
      pCompGlyph->setDimensions(CLDimensions(CLDimensions(sqrt(compSize), sqrt(compSize))));
      pCompGlyph->setPosition(CLPoint(xxx, 5));
      xxx += sqrt(compSize) + 10;

      pResult->addCompartmentGlyph(pCompGlyph);
    }

  //
  // double sss = sqrt(compInfo[NULL].mAreaSum * 40);
  //
  // // determine and set the layout dimensions
  // CLBoundingBox box = pResult->calculateBoundingBox();
  // if (box.getDimensions().getWidth() < sss)
  //   box.getDimensions().setWidth(sss);
  //
  // if (box.getDimensions().getHeight() < sss)
  //   box.getDimensions().setHeight(sss);
  //
  // pResult->setDimensions(CLDimensions(box.getDimensions().getWidth() + 30.0, box.getDimensions().getHeight() + 30.0));

  // randomize
  CCopasiSpringLayout l(pResult, mParams);
  l.randomize();

  // determine and set the layout dimensions
  CLBoundingBox box = pResult->calculateBoundingBox();
  pResult->setDimensions(CLDimensions(box.getDimensions().getWidth() + 30.0, box.getDimensions().getHeight() + 30.0));

  return pResult;
}