當前位置: 首頁>>代碼示例>>Python>>正文


Python MinHash.intersection方法代碼示例

本文整理匯總了Python中sourmash._minhash.MinHash.intersection方法的典型用法代碼示例。如果您正苦於以下問題:Python MinHash.intersection方法的具體用法?Python MinHash.intersection怎麽用?Python MinHash.intersection使用的例子?那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在sourmash._minhash.MinHash的用法示例。


在下文中一共展示了MinHash.intersection方法的1個代碼示例,這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚,您的評價將有助於係統推薦出更棒的Python代碼示例。

示例1: test_intersection_1

# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import intersection [as 別名]
def test_intersection_1(track_abundance):
    a = MinHash(20, 10, track_abundance=track_abundance)
    b = MinHash(20, 10, track_abundance=track_abundance)

    a.add_sequence('TGCCGCCCAGCA')
    b.add_sequence('TGCCGCCCAGCA')

    common = set(a.get_mins())
    combined_size = 3

    intersection, size = a.intersection(b)
    assert intersection == common
    assert combined_size == size

    intersection, size = b.intersection(b)
    assert intersection == common
    assert combined_size == size

    intersection, size = b.intersection(a)
    assert intersection == common
    assert combined_size == size

    intersection, size = a.intersection(a)
    assert intersection == common
    assert combined_size == size

    # add same sequence again
    b.add_sequence('TGCCGCCCAGCA')

    intersection, size = a.intersection(b)
    assert intersection == common
    assert combined_size == size

    intersection, size = b.intersection(b)
    assert intersection == common
    assert combined_size == size

    intersection, size = b.intersection(a)
    assert intersection == common
    assert combined_size == size

    intersection, size = a.intersection(a)
    assert intersection == common
    assert combined_size == size

    a.add_sequence('GTCCGCCCAGTGA')
    b.add_sequence('GTCCGCCCAGTGG')

    new_in_common = set(a.get_mins()).intersection(set(b.get_mins()))
    new_combined_size = 8

    intersection, size = a.intersection(b)
    assert intersection == new_in_common
    assert size == new_combined_size

    intersection, size = b.intersection(a)
    assert intersection == new_in_common
    assert size == new_combined_size

    intersection, size = a.intersection(a)
    assert intersection == set(a.get_mins())

    intersection, size = b.intersection(b)
    assert intersection == set(b.get_mins())
開發者ID:dib-lab,項目名稱:sourmash,代碼行數:66,代碼來源:test__minhash.py


注:本文中的sourmash._minhash.MinHash.intersection方法示例由純淨天空整理自Github/MSDocs等開源代碼及文檔管理平台,相關代碼片段篩選自各路編程大神貢獻的開源項目,源碼版權歸原作者所有,傳播和使用請參考對應項目的License;未經允許,請勿轉載。