本文整理匯總了Python中sourmash._minhash.MinHash.compare方法的典型用法代碼示例。如果您正苦於以下問題：Python MinHash.compare方法的具體用法？Python MinHash.compare怎麽用？Python MinHash.compare使用的例子？那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在類sourmash._minhash.MinHash的用法示例。
在下文中一共展示了MinHash.compare方法的7個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的Python代碼示例。
示例1: test_abundance_compare
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import compare [as 別名]
def test_abundance_compare():
a = MinHash(20, 10, track_abundance=True)
b = MinHash(20, 10, track_abundance=False)
a.add_sequence('TGCCGCCCAGCACCGGGTGACTAGGTTGAGCCATGATTAACCTGCAATGA')
b.add_sequence('TGCCGCCCAGCACCGGGTGACTAGGTTGAGCCATGATTAACCTGCAATGA')
assert a.compare(b) == 1.0
assert b.compare(b) == 1.0
assert b.compare(a) == 1.0
assert a.compare(a) == 1.0
# add same sequence again
b.add_sequence('TGCCGCCCAGCACCGGGTGACTAGGTTGAGCCATGATTAACCTGCAATGA')
assert a.compare(b) == 1.0
assert b.compare(b) == 1.0
assert b.compare(a) == 1.0
assert a.compare(a) == 1.0
b.add_sequence('GATTGGTGCACACTTAACTGGGTGCCGCGCTGGTGCTGATCCATGAAGTT')
x = a.compare(b)
assert x >= 0.3, x
x = b.compare(a)
assert x >= 0.3, x
assert a.compare(a) == 1.0
assert b.compare(b) == 1.0示例2: test_consume_lowercase
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import compare [as 別名]
def test_consume_lowercase(track_abundance):
a = MinHash(20, 10, track_abundance=track_abundance)
b = MinHash(20, 10, track_abundance=track_abundance)
a.add_sequence('TGCCGCCCAGCACCGGGTGACTAGGTTGAGCCATGATTAACCTGCAATGA'.lower())
b.add_sequence('TGCCGCCCAGCACCGGGTGACTAGGTTGAGCCATGATTAACCTGCAATGA')
assert a.compare(b) == 1.0
assert b.compare(b) == 1.0
assert b.compare(a) == 1.0
assert a.compare(a) == 1.0示例3: test_mh_asymmetric
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import compare [as 別名]
def test_mh_asymmetric(track_abundance):
a = MinHash(20, 10, track_abundance=track_abundance)
for i in range(0, 40, 2):
a.add_hash(i)
# different size: 10
b = MinHash(10, 10, track_abundance=track_abundance)
for i in range(0, 80, 4):
b.add_hash(i)
assert a.count_common(b) == 10
assert b.count_common(a) == 10
with pytest.raises(TypeError):
a.compare(b)
a = a.downsample_n(10)
assert a.compare(b) == 0.5
assert b.compare(a) == 0.5示例4: test_mh_compare_diff_max_hash
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import compare [as 別名]
def test_mh_compare_diff_max_hash(track_abundance):
a = MinHash(0, 5, track_abundance=track_abundance, max_hash=5)
b = MinHash(0, 5, track_abundance=track_abundance, max_hash=10)
with pytest.raises(ValueError):
a.compare(b)示例5: test_mh_compare_diff_seed
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import compare [as 別名]
def test_mh_compare_diff_seed(track_abundance):
a = MinHash(20, 5, track_abundance=track_abundance, seed=1)
b = MinHash(20, 5, track_abundance=track_abundance, seed=2)
with pytest.raises(ValueError):
a.compare(b)示例6: test_mh_compare_diff_ksize
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import compare [as 別名]
def test_mh_compare_diff_ksize(track_abundance):
a = MinHash(20, 5, track_abundance=track_abundance)
b = MinHash(20, 6, track_abundance=track_abundance)
with pytest.raises(ValueError):
a.compare(b)示例7: test_mh_compare_diff_protein
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import compare [as 別名]
def test_mh_compare_diff_protein(track_abundance):
a = MinHash(20, 5, False, track_abundance=track_abundance)
b = MinHash(20, 5, True, track_abundance=track_abundance)
with pytest.raises(ValueError):
a.compare(b)