本文整理匯總了Python中sourmash._minhash.MinHash.count_common方法的典型用法代碼示例。如果您正苦於以下問題：Python MinHash.count_common方法的具體用法？Python MinHash.count_common怎麽用？Python MinHash.count_common使用的例子？那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在類sourmash._minhash.MinHash的用法示例。
在下文中一共展示了MinHash.count_common方法的7個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的Python代碼示例。
示例1: test_mh_count_common
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import count_common [as 別名]
def test_mh_count_common(track_abundance):
a = MinHash(20, 10, track_abundance=track_abundance)
for i in range(0, 40, 2):
a.add_hash(i)
b = MinHash(20, 10, track_abundance=track_abundance)
for i in range(0, 80, 4):
b.add_hash(i)
assert a.count_common(b) == 10
assert b.count_common(a) == 10示例2: test_abundance_count_common
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import count_common [as 別名]
def test_abundance_count_common():
a = MinHash(20, 5, False, track_abundance=True)
b = MinHash(20, 5, False, track_abundance=False)
a.add_sequence('AAAAA')
a.add_sequence('AAAAA')
assert a.get_mins() == [2110480117637990133]
assert a.get_mins(with_abundance=True) == {2110480117637990133: 2}
b.add_sequence('AAAAA')
b.add_sequence('GGGGG')
assert a.count_common(b) == 1
assert a.count_common(b) == b.count_common(a)
assert b.get_mins(with_abundance=True) == [2110480117637990133,
10798773792509008305]示例3: test_mh_asymmetric
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import count_common [as 別名]
def test_mh_asymmetric(track_abundance):
a = MinHash(20, 10, track_abundance=track_abundance)
for i in range(0, 40, 2):
a.add_hash(i)
# different size: 10
b = MinHash(10, 10, track_abundance=track_abundance)
for i in range(0, 80, 4):
b.add_hash(i)
assert a.count_common(b) == 10
assert b.count_common(a) == 10
with pytest.raises(TypeError):
a.compare(b)
a = a.downsample_n(10)
assert a.compare(b) == 0.5
assert b.compare(a) == 0.5示例4: test_abundance_simple_2
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import count_common [as 別名]
def test_abundance_simple_2():
a = MinHash(20, 5, False, track_abundance=True)
b = MinHash(20, 5, False, track_abundance=True)
a.add_sequence('AAAAA')
assert a.get_mins() == [2110480117637990133]
assert a.get_mins(with_abundance=True) == {2110480117637990133: 1}
a.add_sequence('AAAAA')
assert a.get_mins() == [2110480117637990133]
assert a.get_mins(with_abundance=True) == {2110480117637990133: 2}
b.add_sequence('AAAAA')
assert a.count_common(b) == 1示例5: test_mh_count_common_diff_ksize
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import count_common [as 別名]
def test_mh_count_common_diff_ksize(track_abundance):
a = MinHash(20, 5, track_abundance=track_abundance)
b = MinHash(20, 6, track_abundance=track_abundance)
with pytest.raises(ValueError):
a.count_common(b)示例6: test_mh_count_common_diff_seed
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import count_common [as 別名]
def test_mh_count_common_diff_seed(track_abundance):
a = MinHash(20, 5, False, track_abundance=track_abundance, seed=1)
b = MinHash(20, 5, True, track_abundance=track_abundance, seed=2)
with pytest.raises(ValueError):
a.count_common(b)示例7: test_mh_count_common_diff_maxhash
# 需要導入模塊: from sourmash._minhash import MinHash [as 別名]
# 或者: from sourmash._minhash.MinHash import count_common [as 別名]
def test_mh_count_common_diff_maxhash(track_abundance):
a = MinHash(0, 5, False, track_abundance=track_abundance, max_hash=1)
b = MinHash(0, 5, True, track_abundance=track_abundance, max_hash=2)
with pytest.raises(ValueError):
a.count_common(b)