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Python Result.snpLoadEnd方法代碼示例

本文整理匯總了Python中result.Result.snpLoadEnd方法的典型用法代碼示例。如果您正苦於以下問題:Python Result.snpLoadEnd方法的具體用法?Python Result.snpLoadEnd怎麽用?Python Result.snpLoadEnd使用的例子?那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在result.Result的用法示例。


在下文中一共展示了Result.snpLoadEnd方法的1個代碼示例,這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚,您的評價將有助於係統推薦出更棒的Python代碼示例。

示例1: open

# 需要導入模塊: from result import Result [as 別名]
# 或者: from result.Result import snpLoadEnd [as 別名]
    sys.stdout.flush()

    # Read in data from SNP file and create insert statements
    with open(curSnpFilePath,'r') as csvfile:
        data = csv.reader(csvfile,delimiter='\t')
        for row in data:
            if(len(row) == 3):        
                hasSig = False
                if row[2] != '' and row[2] != 'false':
                    hasSig = True
                rsidList[row[0]] = 0
                insStr = "INSERT INTO snp (rsid, chr, has_sig) VALUES ('{0}', '{1}', {2}) RETURNING id".format(row[0], row[1], hasSig)
                snpInserts[row[0]] = insStr
    
    # Data for reporting
    result.snpLoadEnd = time.time()
    result.totalSnps = len(snpInserts)
           
    # Insert SNP data into postgres
    cursor = postgresConnection.cursor()

    print "Chromosome " + str(curChr) + ". Inserting SNP Data."
    sys.stdout.flush()

    # Log current run start time
    result.snpInsertStart = time.time()
    
    # For each snp, insert record and then grab primary key
    for rsid,snp in snpInserts.iteritems():
        cursor.execute(snp)
        rsidList[rsid] = cursor.fetchone()[0]
開發者ID:wadeschulz,項目名稱:research_snpdb,代碼行數:33,代碼來源:postgresql-loader.py


注:本文中的result.Result.snpLoadEnd方法示例由純淨天空整理自Github/MSDocs等開源代碼及文檔管理平台,相關代碼片段篩選自各路編程大神貢獻的開源項目,源碼版權歸原作者所有,傳播和使用請參考對應項目的License;未經允許,請勿轉載。