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Python Result.qryByGene方法代碼示例

本文整理匯總了Python中result.Result.qryByGene方法的典型用法代碼示例。如果您正苦於以下問題:Python Result.qryByGene方法的具體用法?Python Result.qryByGene怎麽用?Python Result.qryByGene使用的例子?那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在result.Result的用法示例。


在下文中一共展示了Result.qryByGene方法的2個代碼示例,這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚,您的評價將有助於係統推薦出更棒的Python代碼示例。

示例1: str

# 需要導入模塊: from result import Result [as 別名]
# 或者: from result.Result import qryByGene [as 別名]
        print "Running queries, count " + str(z)
    
        idxStart = time.time()
        cursor.execute("SELECT * FROM locus l, snp s WHERE l.snp_id = s.id AND s.rsid = 'rs8788'")
        idxEnd = time.time()
        result.qryByRsid = idxEnd - idxStart

        idxStart = time.time()
        cursor.execute("SELECT count(s.id) FROM locus l, snp s WHERE l.snp_id = s.id AND s.has_sig = true")
        idxEnd = time.time()
        result.qryByClinSig = idxEnd - idxStart

        idxStart = time.time()
        cursor.execute("SELECT count(distinct s.rsid) FROM locus l, snp s WHERE l.snp_id = s.id AND l.gene = 'GRIN2B'")
        idxEnd = time.time()
        result.qryByGene = idxEnd - idxStart
    
        idxStart = time.time()
        cursor.execute("SELECT count(distinct s.rsid) FROM locus l, snp s WHERE l.snp_id = s.id AND l.gene = 'GRIN2B' AND s.has_sig = true")
        idxEnd = time.time()
        result.qryByGeneSig = idxEnd - idxStart        

        resultsFile.write(result.toString() + '\n')

# Close pgsql cursor
cursor.close()

resultsFile.close()

postgresConnection.close()
print "Run complete."
開發者ID:wadeschulz,項目名稱:research_snpdb,代碼行數:33,代碼來源:postgresql-loader.py

示例2: str

# 需要導入模塊: from result import Result [as 別名]
# 或者: from result.Result import qryByGene [as 別名]
        result.tag = tag
        print "Running queries, count " + str(z)
        qryStart = time.time()
        mongoCollection.find({"rsid":"rs8788"})
        qryEnd = time.time()
        result.qryByRsid = qryEnd-qryStart
    
        qryStart = time.time()
        temptotal = mongoCollection.find({"has_sig":True}).count()
        qryEnd = time.time()
        result.qryByClinSig = qryEnd-qryStart
    
        qryStart = time.time()
        temptotal = mongoCollection.find({"loci.gene":"GRIN2B"}).count()
        qryEnd = time.time()
        result.qryByGene = qryEnd-qryStart        
    
        qryStart = time.time()
        temptotal = mongoCollection.find({"has_sig":True,"loci.gene":"GRIN2B"}).count()
        qryEnd = time.time()
        result.qryByGeneSig = qryEnd-qryStart     

        resultsFile.write(result.toString() + '\n')
        if remote:
            try:
                print "Sending to GDocs..."
                gs.login()
                ws.append_row(result.stringArr()) 
            except:
                print "Unable to send to GDocs, continuing..."
開發者ID:AgileMedicine,項目名稱:GenomeDataManagementResearch,代碼行數:32,代碼來源:mongo-loader.py


注:本文中的result.Result.qryByGene方法示例由純淨天空整理自Github/MSDocs等開源代碼及文檔管理平台,相關代碼片段篩選自各路編程大神貢獻的開源項目,源碼版權歸原作者所有,傳播和使用請參考對應項目的License;未經允許,請勿轉載。