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Python Result.snpInsertEnd方法代碼示例

本文整理匯總了Python中result.Result.snpInsertEnd方法的典型用法代碼示例。如果您正苦於以下問題:Python Result.snpInsertEnd方法的具體用法?Python Result.snpInsertEnd怎麽用?Python Result.snpInsertEnd使用的例子?那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在result.Result的用法示例。


在下文中一共展示了Result.snpInsertEnd方法的1個代碼示例,這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚,您的評價將有助於係統推薦出更棒的Python代碼示例。

示例1: str

# 需要導入模塊: from result import Result [as 別名]
# 或者: from result.Result import snpInsertEnd [as 別名]
    print "Chromosome " + str(curChr) + ". Inserting SNP Data."
    sys.stdout.flush()

    # Log current run start time
    result.snpInsertStart = time.time()
    
    # For each snp, insert record and then grab primary key
    for rsid,snp in snpInserts.iteritems():
        cursor.execute(snp)
        rsidList[rsid] = cursor.fetchone()[0]
        
    # Commit all inserts to pgsql and grab end time
    postgresConnection.commit()
    
    # Log completed time, close pgsql cursor
    result.snpInsertEnd=time.time()
    cursor.close()

    # Clear list of SNPs to free up memory
    snpInserts.clear()

    print "Chromosome " + str(curChr) + ". Reading loci Data."
    result.lociLoadStart = time.time()
    
    # Now that we have primary keys for each SNP, read in loci data
    with open(curLociFilePath,'r') as csvfile:
        data = csv.reader(csvfile,delimiter='\t')
        for row in data:
            if(len(row) == 4):
                # Load loci in pgsql statements
                if row[0] in rsidList and rsidList[row[0]] > 0: # If RSID value is present, load with PK
開發者ID:wadeschulz,項目名稱:research_snpdb,代碼行數:33,代碼來源:postgresql-loader.py


注:本文中的result.Result.snpInsertEnd方法示例由純淨天空整理自Github/MSDocs等開源代碼及文檔管理平台,相關代碼片段篩選自各路編程大神貢獻的開源項目,源碼版權歸原作者所有,傳播和使用請參考對應項目的License;未經允許,請勿轉載。