本文整理汇总了Python中process.sequence.AlignmentList.sequence_similarity方法的典型用法代码示例。如果您正苦于以下问题：Python AlignmentList.sequence_similarity方法的具体用法？Python AlignmentList.sequence_similarity怎么用？Python AlignmentList.sequence_similarity使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类process.sequence.AlignmentList的用法示例。
在下文中一共展示了AlignmentList.sequence_similarity方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: SeconaryOpsTest
# 需要导入模块: from process.sequence import AlignmentList [as 别名]
# 或者: from process.sequence.AlignmentList import sequence_similarity [as 别名]
#.........这里部分代码省略.........
print(self.aln_obj.alignments)
self.assertEqual(self.aln_obj.outlier_segregating_sp(),
{"exception": "single_alignment"})
def test_single_aln_outlier_seqsize(self):
self.aln_obj.update_active_alignments([dna_data_fas[0]])
self.assertEqual(self.aln_obj.outlier_sequence_size(),
{"exception": "single_alignment"})
def test_single_aln_outlier_seqsize_sp(self):
self.aln_obj.update_active_alignments([dna_data_fas[0]])
self.assertEqual(self.aln_obj.outlier_sequence_size_sp(),
{"exception": "single_alignment"})
def test_single_aln_average_seqsize_per_species(self):
self.aln_obj.update_active_alignments([dna_data_fas[0]])
self.assertEqual(self.aln_obj.average_seqsize_per_species(),
{"exception": "single_alignment"})
def test_single_aln_average_seqsize(self):
self.aln_obj.update_active_alignments([dna_data_fas[0]])
self.assertEqual(self.aln_obj.average_seqsize(),
{"exception": "single_alignment"})
def test_single_aln_sequence_similarity(self):
self.aln_obj.update_active_alignments([dna_data_fas[0]])
self.assertEqual(self.aln_obj.sequence_similarity(),
{"exception": "single_alignment"})
def test_single_aln_sequence_segregation(self):
self.aln_obj.update_active_alignments([dna_data_fas[0]])
self.assertEqual(self.aln_obj.sequence_segregation(),
{"exception": "single_alignment"})
def test_single_aln_length_polymorphism_correlation(self):
self.aln_obj.update_active_alignments([dna_data_fas[0]])
self.assertEqual(self.aln_obj.length_polymorphism_correlation(),
{"exception": "single_alignment"})
def test_single_aln_taxa_distribution(self):
self.aln_obj.update_active_alignments([dna_data_fas[0]])
self.assertEqual(self.aln_obj.taxa_distribution(),
{"exception": "single_alignment"})
def test_single_aln_cumulative_missing_genes(self):
self.aln_obj.update_active_alignments([dna_data_fas[0]])
self.assertEqual(self.aln_obj.cumulative_missing_genes(),