本文整理汇总了Python中process.sequence.AlignmentList.allele_frequency_spectrum方法的典型用法代码示例。如果您正苦于以下问题：Python AlignmentList.allele_frequency_spectrum方法的具体用法？Python AlignmentList.allele_frequency_spectrum怎么用？Python AlignmentList.allele_frequency_spectrum使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类process.sequence.AlignmentList的用法示例。
在下文中一共展示了AlignmentList.allele_frequency_spectrum方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: SeconaryOpsTest
# 需要导入模块: from process.sequence import AlignmentList [as 别名]
# 或者: from process.sequence.AlignmentList import allele_frequency_spectrum [as 别名]
#.........这里部分代码省略.........
self.assertTrue(self.aln_obj.missing_genes_average())
def test_average_seqsize_per_species(self):
self.assertTrue(self.aln_obj.average_seqsize_per_species())
def test_average_seqsize(self):
self.assertTrue(self.aln_obj.average_seqsize())
def test_characters_proportion(self):
self.assertTrue(self.aln_obj.characters_proportion())
def test_characters_proportion_per_species(self):
self.assertTrue(self.aln_obj.characters_proportion_per_species())
def test_characters_proportion_gene(self):
self.assertTrue(self.aln_obj.characters_proportion_gene(
join(data_path, "BaseConc1.fas"), 10
))
def test_sequence_similarity(self):
self.assertTrue(self.aln_obj.sequence_similarity())
def test_sequence_similarity_per_species(self):
self.assertTrue(self.aln_obj.sequence_similarity_per_species())
def test_sequence_similarity_gene(self):
self.assertTrue(self.aln_obj.sequence_similarity_gene(
join(data_path, "BaseConc1.fas"), 10))
def test_sequence_conservation(self):
self.assertTrue(self.aln_obj.sequence_conservation_gnp(
join(data_path, "BaseConc1.fas"), 10
))
def test_sequence_segregation(self):
self.assertTrue(self.aln_obj.sequence_segregation())
def test_sequence_segregation_per_species(self):
self.assertTrue(self.aln_obj.sequence_segregation_per_species())
def test_sequence_segregation_gene(self):
self.assertTrue(self.aln_obj.sequence_segregation_gene(
join(data_path, "BaseConc1.fas"), 10))
def test_length_polymorphism_correlation(self):
self.assertTrue(self.aln_obj.length_polymorphism_correlation())
def test_allele_frequency_spectrum(self):
self.assertTrue(self.aln_obj.allele_frequency_spectrum())
def test_allele_frequency_spectrum_gene(self):
self.assertTrue(self.aln_obj.allele_frequency_spectrum_gene(
join(data_path, "BaseConc1.fas"), None))
def test_taxa_distribution(self):
self.assertTrue(self.aln_obj.taxa_distribution())
def test_cumulative_missing_genes(self):
self.assertTrue(self.aln_obj.cumulative_missing_genes())
def test_outlier_missing_data(self):
self.assertTrue(self.aln_obj.outlier_missing_data())
def test_outlier_missing_data_sp(self):
self.assertTrue(self.aln_obj.outlier_missing_data_sp())
def test_outlier_segregating(self):
self.assertTrue(self.aln_obj.outlier_segregating())
def test_outlier_segregating_sp(self):
self.assertTrue(self.aln_obj.outlier_segregating_sp())
def test_outlier_sequence_size(self):
self.assertTrue(self.aln_obj.outlier_sequence_size())
def test_outlier_sequence_size_sp(self):
self.assertTrue(self.aln_obj.outlier_sequence_size_sp())