本文整理汇总了Python中dipper.utils.GraphUtils.GraphUtils.addPerson方法的典型用法代码示例。如果您正苦于以下问题：Python GraphUtils.addPerson方法的具体用法？Python GraphUtils.addPerson怎么用？Python GraphUtils.addPerson使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类dipper.utils.GraphUtils.GraphUtils的用法示例。
在下文中一共展示了GraphUtils.addPerson方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: _process_data
# 需要导入模块: from dipper.utils.GraphUtils import GraphUtils [as 别名]
# 或者: from dipper.utils.GraphUtils.GraphUtils import addPerson [as 别名]
#.........这里部分代码省略.........
equiv_cell_line = 'Coriell:'+dna_ref
# some of the equivalent ids are not defined
# in the source data; so add them
gu.addIndividualToGraph(
g, equiv_cell_line, None, cell_line_reagent_id)
gu.addSameIndividual(g, cell_line_id, equiv_cell_line)
# Cell line derives from patient
geno.addDerivesFrom(cell_line_id, patient_id)
geno.addDerivesFrom(cell_line_id, cell_type)
# Cell line a member of repository
gu.addMember(g, repository, cell_line_id)
if cat_remark != '':
gu.addDescription(g, cell_line_id, cat_remark)
# Cell age_at_sampling
# TODO add the age nodes when modeled properly in #78
# if (age != ''):
# this would give a BNode that is an instance of Age.
# but i don't know how to connect
# the age node to the cell line? we need to ask @mbrush
# age_id = '_'+re.sub('\s+','_',age)
# gu.addIndividualToGraph(
# g,age_id,age,self.terms['age'])
# gu.addTriple(
# g,age_id,self.properties['has_measurement'],age,
# True)
# ############# BUILD THE PATIENT #############
# Add the patient ID as an individual.
gu.addPerson(g, patient_id, patient_label)
# TODO map relationship to proband as a class
# (what ontology?)
# Add race of patient
# FIXME: Adjust for subcategories based on ethnicity field
# EDIT: There are 743 different entries for ethnicity...
# Too many to map?
# Add ethnicity as literal in addition to the mapped race?
# Adjust the ethnicity txt (if using)
# to initial capitalization to remove ALLCAPS
# TODO race should go into the individual's background
# and abstracted out to the Genotype class punting for now.
# if race != '':
# mapped_race = self._map_race(race)
# if mapped_race is not None:
# gu.addTriple(
# g,patient_id,self.terms['race'],mapped_race)
# gu.addSubclass(
# g,self.terms['ethnic_group'],mapped_race)
# ############# BUILD THE FAMILY #############
# Add triples for family_id, if present.
if family_id != '':
family_comp_id = 'CoriellFamily:'+family_id
family_label = \
' '.join(('Family of proband with', short_desc))
# Add the family ID as a named individual
gu.addIndividualToGraph(