Python OWGUI.radioButtonsInBox方法代码示例

# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import radioButtonsInBox [as 别名]
    def __init__(self, parent=None, signalManager = None):
        OWWidget.__init__(self, parent, signalManager, 'Process Chip Data')
        self.callbackDeposit = []

        self.inputs = [("Structured Data", DataFiles, self.chipdata)]
        self.outputs = [("Structured Data", DataFiles)]

        self.chipdata = None; self.datasets = None
        self.std = [("No preprocessing", None),
                    ("Array-based standardization", chipstat.standardize_arrays),
                    ("Gene-based standardization", chipstat.standardize_genes),
                    ("First array-, then gene-based standardization", lambda e,r: chipstat.standardize_genes(chipstat.standardize_arrays(e,r),r)),
                    ("First gene-, then array-based standardization", lambda e,r: chipstat.standardize_arrays(chipstat.standardize_genes(e,r),r))]
        # Settings
        self.data = None
        self.preStdMethod = 0; self.preStdRob = 1
        self.postStdMethod = 0; self.postStdRob = 1
        
        self.mergeType = 0
        self.commitOnChange = 0
        self.loadSettings()

        # GUI
        # info
        box = QVGroupBox("Info", self.controlArea)
        self.infoa = QLabel('No data on input.', box)
        self.infob = QLabel('', box)
        
        # preprocessing
        OWGUI.separator(self.controlArea)
        box = QVGroupBox("Preprocessing", self.controlArea)
        labels = [x[0] for x in self.std]
        OWGUI.comboBox(box, self, 'preStdMethod', label=None, labelWidth=None, orientation='vertical', items=labels, callback=self.selectionChange)
        self.preRobBtn = OWGUI.checkBox(box, self, "preStdRob", "Robust standardization", callback=self.selectionChange)
        
        # merge
        OWGUI.separator(self.controlArea)
        self.mergeTypes = [(0, "No merging"), ('mean', 'Mean'), ('median', 'Median'), ('min', 'Minimum expression'), ('max', 'Maximum expression')]
        labels = [x[1] for x in self.mergeTypes]
        OWGUI.radioButtonsInBox(self.controlArea, self, 'mergeType', labels, box='Merge Replicas', tooltips=None, callback=self.selectionChange)

        # postprocessing
        OWGUI.separator(self.controlArea)
        self.boxPostproc = QVGroupBox("Postprocessing", self.controlArea)
        labels = [x[0] for x in self.std]
        OWGUI.comboBox(self.boxPostproc, self, 'postStdMethod', label=None, labelWidth=None, orientation='vertical', items=labels, callback=self.selectionChange)
        self.postRobBtn = OWGUI.checkBox(self.boxPostproc, self, "postStdRob", "Robust standardization", callback=self.selectionChange)

        # output
        OWGUI.separator(self.controlArea)
        box = QVGroupBox("Output", self.controlArea)
        OWGUI.checkBox(box, self, 'commitOnChange', 'Commit data on selection change')
        self.commitBtn = OWGUI.button(box, self, "Commit", callback=self.selectionChange, disabled=1)

        self.setBtnsState()
        self.resize(100,100)

# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import radioButtonsInBox [as 别名]
    def __init__(self, parent=None, signalManager = None):
        OWWidget.__init__(self, parent, signalManager, 'Epistasis Analysis') 
        
        self.inputs = [("Examples", ExampleTable, self.dataset, Multiple), ("Structured  Data", DataFiles, self.chipdata, 1)]
        self.outputs = [("Gene Selection", ExampleSelection), ("Examples A->B", ExampleTable), ("Examples B->A", ExampleTable), ("Examples A||B", ExampleTable)]

        self.data = []
        self.selectedFile = None
        self.A, self.B, self.AB = (None, None, None)
        self.epiA, self.epiB, self.para = (0, 0, 0)
        self.distype = 0
        #set default settings
        self.loadSettings()

        # Selection of data files
        box = OWGUI.widgetBox(self.controlArea, "Data files", addSpace=True)
#        box = QVButtonGroup("Data Files", self.controlArea)
#        self.fileLB = OWGUI.listBox(box, self, "selectedFile", "files", 
#                                    tooltip="Select example table",
##                                    callback=self.fileSelectionChanged,
#                                    selectionMode=QListWidget.SingleSelection,
#                                    )
#        self.connect(self.fileLB, SIGNAL("currentRowChanged(int)"), self.fileSelectionChanged)
        self.fileLB = QListWidget()
#        self.fileLB.setMaximumWidth(10)
        self.connect(self.fileLB, SIGNAL("highlighted(int)"), self.fileSelectionChanged)
#        self.connect(self.fileLB, SIGNAL("selected(int)"), self.setFileReferenceBySelection)
        box.layout().addWidget(self.fileLB)
        
        hbox = OWGUI.widgetBox(box, "", orientation="horizontal")
#        hbox = QHBox(box)
        self.markBtns = []
        for (i, lbl) in enumerate(["A","B","D"]):
            btn = OWGUI.button(hbox, self, lbl,
                               callback=lambda i=i: self.setMark(i),
                               disabled=1)
#            btn.setMaximumWidth(45)
#            btn.setSizePolicy(QSizePolicy.Maximum, QSizePolicy.Fixed)
            self.markBtns.append(btn)

        # Relations, checkbox for gene selection
        self.sbox = OWGUI.widgetBox(self.controlArea, "Relations (Gene Selection)")
#        self.sbox = QVButtonGroup("Relations (Gene Selection)", self.controlArea)
        self.selChkbox = []
        self.cbinfo = (("epiA", "A -> B", "Gene B is epistatic to gene A"),
                       ("epiB", "B -> A", "Gene A is epistatic to gene B"),
                       ("para", "A || B", "Genes A and B are on parallel pathways"))
        for (i, cb) in enumerate(self.cbinfo):
            cb = OWGUI.checkBox(self.sbox, self, cb[0], cb[1],
                                tooltip=cb[2],
                                callback=self.filterSelectionChanged)
            self.selChkbox.append(cb)
        self.infochi = OWGUI.widgetLabel(self.sbox, "") #QLabel(self.sbox, '')
        self.sbox.setDisabled(1)

        OWGUI.radioButtonsInBox(self.controlArea, self, "distype", ["Average By Gene", "Average By Measurement"],
                                box="Distance", tooltips=None, callback=self.analysis)

        # scene
        self.scene = QGraphicsScene()
        self.sceneView = QGraphicsView()
        self.sceneView.setScene(self.scene)
        self.scene.setSceneRect(QRectF(0, 0, canvasW, canvasW))
        self.mainArea.layout().addWidget(self.sceneView)
        
        # canvas
#        self.canvas = QCanvas()
#        self.layout = QVBoxLayout(self.mainArea)
#        self.canvasView = QCanvasView(self.canvas, self.mainArea)
#        self.canvas.resize(canvasW, canvasW)
#        self.layout.add(self.canvasView)

        self.resize(420,350)

# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import radioButtonsInBox [as 别名]
    def __init__(self, parent=None, signalManager=None, name=" GEO Data Sets"):
        OWWidget.__init__(self, parent, signalManager, name)

        self.outputs = [("Expression Data", ExampleTable)]

        ## Settings
        self.selectedAnnotation = 0
        self.includeIf = False
        self.minSamples = 3
        self.autoCommit = False
        self.outputRows = 0
        self.mergeSpots = True
        self.filterString = ""
        self.currentGds = None
        self.selectionChanged = False
        self.autoCommit = False
        self.gdsSelectionStates = {}
        self.splitterSettings = [
            '\x00\x00\x00\xff\x00\x00\x00\x00\x00\x00\x00\x02\x00\x00\x01\xea\x00\x00\x00\xd7\x01\x00\x00\x00\x07\x01\x00\x00\x00\x02',
            '\x00\x00\x00\xff\x00\x00\x00\x00\x00\x00\x00\x02\x00\x00\x01\xb5\x00\x00\x02\x10\x01\x00\x00\x00\x07\x01\x00\x00\x00\x01'
        ]
        self.datasetNames = {}
        self.loadSettings()

        self.datasetName = ""

        ## GUI
        self.infoBox = OWGUI.widgetLabel(
            OWGUI.widgetBox(self.controlArea, "Info", addSpace=True),
            "Initializing\n\n"
        )

        box = OWGUI.widgetBox(self.controlArea, "Output", addSpace=True)
        OWGUI.radioButtonsInBox(box, self, "outputRows",
                                ["Genes or spots", "Samples"], "Rows",
                                callback=self.commitIf)
        OWGUI.checkBox(box, self, "mergeSpots", "Merge spots of same gene",
                       callback=self.commitIf)

        OWGUI.separator(box)
        self.nameEdit = OWGUI.lineEdit(
            box, self, "datasetName", "Data set name",
            tooltip="Override the default output data set name",
            callback=self.onNameEdited
        )
        self.nameEdit.setPlaceholderText("")

        box = OWGUI.widgetBox(self.controlArea, "Commit", addSpace=True)
        self.commitButton = OWGUI.button(box, self, "Commit",
                                         callback=self.commit)
        cb = OWGUI.checkBox(box, self, "autoCommit", "Commit on any change")
        OWGUI.setStopper(self, self.commitButton, cb, "selectionChanged",
                         self.commit)
        OWGUI.rubber(self.controlArea)

        self.filterLineEdit = OWGUIEx.lineEditHint(
            self.mainArea, self, "filterString", "Filter",
            caseSensitive=False, matchAnywhere=True,
            callback=self.filter,  delimiters=" ")

        splitter = QSplitter(Qt.Vertical, self.mainArea)
        self.mainArea.layout().addWidget(splitter)
        self.treeWidget = QTreeView(splitter)

        self.treeWidget.setSelectionMode(QAbstractItemView.SingleSelection)
        self.treeWidget.setRootIsDecorated(False)
        self.treeWidget.setSortingEnabled(True)
        self.treeWidget.setAlternatingRowColors(True)
        self.treeWidget.setUniformRowHeights(True)
        self.treeWidget.setEditTriggers(QTreeView.NoEditTriggers)

        linkdelegate = LinkStyledItemDelegate(self.treeWidget)
        self.treeWidget.setItemDelegateForColumn(1, linkdelegate)
        self.treeWidget.setItemDelegateForColumn(8, linkdelegate)
        self.treeWidget.setItemDelegateForColumn(
            0, OWGUI.IndicatorItemDelegate(self.treeWidget,
                                           role=Qt.DisplayRole))

        proxyModel = MySortFilterProxyModel(self.treeWidget)
        self.treeWidget.setModel(proxyModel)
        self.treeWidget.selectionModel().selectionChanged.connect(
            self.updateSelection
        )
        self.treeWidget.viewport().setMouseTracking(True)

        splitterH = QSplitter(Qt.Horizontal, splitter)

        box = OWGUI.widgetBox(splitterH, "Description")
        self.infoGDS = OWGUI.widgetLabel(box, "")
        self.infoGDS.setWordWrap(True)
        OWGUI.rubber(box)

        box = OWGUI.widgetBox(splitterH, "Sample Annotations")
        self.annotationsTree = QTreeWidget(box)
        self.annotationsTree.setHeaderLabels(
            ["Type (Sample annotations)", "Sample count"]
        )
        self.annotationsTree.setRootIsDecorated(True)
        box.layout().addWidget(self.annotationsTree)
        self.annotationsTree.itemChanged.connect(
#.........这里部分代码省略.........

# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import radioButtonsInBox [as 别名]
    def __init__(self, parent=None, signalManager=None, name=" GEO Data Sets"):
        OWWidget.__init__(self, parent, signalManager, name)

        self.selectionChanged = False
        self.filterString = ""
        self.datasetName = ""

        ## GUI
        box = gui.widgetBox(self.controlArea, "Info", addSpace=True)
        self.infoBox = gui.widgetLabel(box, "Initializing\n\n")

        box = gui.widgetBox(self.controlArea, "Output", addSpace=True)
        gui.radioButtonsInBox(box, self, "outputRows",
                              ["Genes in rows", "Samples in rows"], "Rows",
                              callback=self.commitIf)

        gui.checkBox(box, self, "mergeSpots", "Merge spots of same gene",
                     callback=self.commitIf)

        gui.separator(box)
        self.nameEdit = gui.lineEdit(
            box, self, "datasetName", "Data set name",
            tooltip="Override the default output data set name",
            callback=self.onNameEdited
        )
        self.nameEdit.setPlaceholderText("")

        if sys.version_info < (3, ):
            box = gui.widgetBox(self.controlArea, "Commit", addSpace=True)
            self.commitButton = gui.button(
                box, self, "Commit", callback=self.commit)
            cb = gui.checkBox(box, self, "autoCommit", "Commit on any change")
            gui.setStopper(self, self.commitButton, cb, "selectionChanged",
                           self.commit)
        else:
            gui.auto_commit(self.controlArea, self, "autoCommit", "Commit",
                            box="Commit")
            self.commitIf = self.commit

        gui.rubber(self.controlArea)

        gui.widgetLabel(self.mainArea, "Filter")
        self.filterLineEdit = QLineEdit(
            textChanged=self.filter
        )
        self.completer = TokenListCompleter(
            self, caseSensitivity=Qt.CaseInsensitive
        )
        self.filterLineEdit.setCompleter(self.completer)

        self.mainArea.layout().addWidget(self.filterLineEdit)

        splitter = QSplitter(Qt.Vertical, self.mainArea)
        self.mainArea.layout().addWidget(splitter)
        self.treeWidget = QTreeView(splitter)

        self.treeWidget.setSelectionMode(QTreeView.SingleSelection)
        self.treeWidget.setRootIsDecorated(False)
        self.treeWidget.setSortingEnabled(True)
        self.treeWidget.setAlternatingRowColors(True)
        self.treeWidget.setUniformRowHeights(True)
        self.treeWidget.setEditTriggers(QTreeView.NoEditTriggers)

        linkdelegate = LinkStyledItemDelegate(self.treeWidget)
        self.treeWidget.setItemDelegateForColumn(1, linkdelegate)
        self.treeWidget.setItemDelegateForColumn(8, linkdelegate)
        self.treeWidget.setItemDelegateForColumn(
            0, gui.IndicatorItemDelegate(self.treeWidget,
                                         role=Qt.DisplayRole))

        proxyModel = MySortFilterProxyModel(self.treeWidget)
        self.treeWidget.setModel(proxyModel)
        self.treeWidget.selectionModel().selectionChanged.connect(
            self.updateSelection
        )
        self.treeWidget.viewport().setMouseTracking(True)

        splitterH = QSplitter(Qt.Horizontal, splitter)

        box = gui.widgetBox(splitterH, "Description")
        self.infoGDS = gui.widgetLabel(box, "")
        self.infoGDS.setWordWrap(True)
        gui.rubber(box)

        box = gui.widgetBox(splitterH, "Sample Annotations")
        self.annotationsTree = QTreeWidget(box)
        self.annotationsTree.setHeaderLabels(
            ["Type (Sample annotations)", "Sample count"]
        )
        self.annotationsTree.setRootIsDecorated(True)
        box.layout().addWidget(self.annotationsTree)
        self.annotationsTree.itemChanged.connect(
            self.annotationSelectionChanged
        )
        self._annotationsUpdating = False
        self.splitters = splitter, splitterH

        for sp, setting in zip(self.splitters, self.splitterSettings):
            sp.splitterMoved.connect(self.splitterMoved)
            sp.restoreState(setting)
#.........这里部分代码省略.........

# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import radioButtonsInBox [as 别名]
    def __init__(self, parent=None, signalManager = None):
        OWWidget.__init__(self, parent, signalManager, 'ANOVA')
        # input / output data: [("name1", [orange.ExampleTable1a,...]), ("name2", [orange.ExampleTable2a,...])]
        self.inputs = [("Structured Data", DataFiles, self.onDataInput)]
        self.outputs = [("Example Selection", ExampleSelection, Default), ("Selected Structured Data", DataFiles, Default), ("Other Structured Data", DataFiles)]

        # data, p-values, selected examples
        self.dataStructure = None   # input data
        self.numExamples = 0
        self.numVariables = 0
        self.ps = None              # p-values: 2D Numeric.array of shape (3, numExamples)
        self.selectorName = ""      # for Example Selection output: (self.selectorName, [0,1,0,...])

        # Settings
        self.anovaType = 0      # 0: single-sample t-test, 1: one-way (A), 2: one-way (B), 3: two-way (A,B), 4: ful factorial (A, B, A*B)
        self.compareToValue = 0 # single sample t-test, value to compare to
        self._interaction = 0    # 0: no interaction, 1: test for interaction effect (set this value manually !!!)
        self.selectorA = True
        self.selectorB = False
        self.selectorI = False
        self.alphaA = "0.05"
        self.alphaB = "0.05"
        self.alphaI = "0.05"
        self.autoUpdateSelName = 1
        self.sendNotSelectedData = 1
        self.sendProbabilities = 0
        self.commitOnChange = 0
        self.loadSettings()

        # GUI
        self.mainArea.setFixedWidth(0)
        ca = self.controlArea
       
        # info
        box = OWGUI.widgetBox(ca, "Info")
        #gl.addWidget(box,0,0)
        self.infoa = OWGUI.label(box, self, 'No data on input.')
        self.infob = OWGUI.label(box, self, "")
        self.infoc = OWGUI.label(box, self, "")

        # ANOVA type
        # group selection
        anovaTypes = ["Single sample t-test", 
            "Single-factor (A, variables)", 
            "Single-factor (B, data sets)", 
            "Two-factor", 
            "Two-factor with interaction effect"]

        self.boxAnovaType = OWGUI.widgetBox(ca, "Anova Type")
        self.anovaTypeS = OWGUI.radioButtonsInBox(self.boxAnovaType, self, "anovaType", btnLabels=anovaTypes)
        
        self.boxAnovaType.setDisabled(1)

        self.boxCompareTo = OWGUI.widgetBox(self.boxAnovaType)
        OWGUI.lineEdit(self.boxCompareTo, self, "compareToValue", callback=self.onCompareToChange, label="compare to")

        # selection of examples
        self.boxSelection = OWGUI.widgetBox(ca, "Example Selection")
        self.lblNumGenes = []   # list of labels

        # selector A
        self.boxSelectorA = OWGUI.widgetBox(self.boxSelection)
        self.cbSelectorA = OWGUI.checkBox(self.boxSelectorA, self, "selectorA", "Factor A (variables)", callback=self.onSelectionChange,
                                          tooltip='H0: The mean does not depend on factor A (represented by variables).')

        frmA = OWGUI.widgetBox(self.boxSelectorA)
        leA = OWGUI.lineEdit(frmA, self, "alphaA", orientation="horizontal", callback=lambda x=0: self.onAlphaChange(x), label= "p <= ")
        self.lblNumGenes.append(OWGUI.label(frmA, self, ""))

        # selector B
        self.boxSelectorB = OWGUI.widgetBox(self.boxSelection)
        self.cbSelectorB = OWGUI.checkBox(self.boxSelectorB, self, "selectorB", "Factor B (data sets)", callback=self.onSelectionChange,
                                          tooltip='H0: The mean does not depend on factor B (represented by data sets).')
 
        frmB = OWGUI.widgetBox(self.boxSelectorB)
        leB = OWGUI.lineEdit(frmB, self, "alphaB", orientation="horizontal", callback=lambda x=1: self.onAlphaChange(x), label= "p <= ")
        self.lblNumGenes.append(OWGUI.label(frmB, self, ""))

        # selector I
        self.boxSelectorI = OWGUI.widgetBox(self.boxSelection)
        self.cbSelectorI = OWGUI.checkBox(self.boxSelectorI, self, "selectorI", "Interaction (variables * data sets)", callback=self.onSelectionChange,
                                          tooltip='H0: There is no interaction between factor A and factor B.')
 
        frmI = OWGUI.widgetBox(self.boxSelectorI)
        leI = OWGUI.lineEdit(frmI, self, "alphaI", orientation="horizontal", callback=lambda x=2: self.onAlphaChange(x), label= "p <= ")
        self.lblNumGenes.append(OWGUI.label(frmI, self, ""))

        # output
        box = OWGUI.widgetBox(ca, "Output")
        self.leSelectorName = OWGUI.lineEdit(box, self, 'selectorName', label='Selector Name: ')
        self.leSelectorName.setReadOnly(self.autoUpdateSelName)
        OWGUI.checkBox(box, self, 'autoUpdateSelName', 'Automatically update selector name', callback=self.onAutoUpdateSelNameChange)
        OWGUI.checkBox(box, self, 'sendNotSelectedData', 'Send not selected data', callback=self.onSendNotSelectedChange)
        OWGUI.checkBox(box, self, 'sendProbabilities', 'Show p-values', callback=self.onSendProbabilitiesChange)
        OWGUI.checkBox(box, self, 'commitOnChange', 'Commit data on selection change', callback=lambda: self.onCommit(self.commitOnChange))
        self.btnCommit = OWGUI.button(box, self, "Commit", callback=self.onCommit)

        # enable/disable anova type box, example selection box, commit button, update the number of examples for individual selectors
        self.updateAnovaTypeBox()
        self.updateSelectorBox()
#.........这里部分代码省略.........

# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import radioButtonsInBox [as 别名]
    def __init__(self,parent=None, signalManager = None):
        OWWidget.__init__(self, parent, signalManager, "Nomogram", 1)

        #self.setWFlags(Qt.WResizeNoErase | Qt.WRepaintNoErase) #this works like magic.. no flicker during repaint!
        self.parent = parent
#        self.setWFlags(self.getWFlags()+Qt.WStyle_Maximize)

        self.callbackDeposit = [] # deposit for OWGUI callback functions
        self.alignType = 0
        self.contType = 0
        self.yAxis = 0
        self.probability = 0
        self.verticalSpacing = 60
        self.verticalSpacingContinuous = 100
        self.diff_between_ordinal = 30
        self.fontSize = 9
        self.lineWidth = 1
        self.histogram = 0
        self.histogram_size = 10
        self.data = None
        self.cl = None
        self.confidence_check = 0
        self.confidence_percent = 95
        self.sort_type = 0

        self.loadSettings()

        self.pointsName = ["Total", "Total"]
        self.totalPointsName = ["Probability", "Probability"]
        self.bnomogram = None


        self.inputs=[("Classifier", orange.Classifier, self.classifier), ("Data", Orange.data.Table, self.data)]


        self.TargetClassIndex = 0
        self.targetCombo = OWGUI.comboBox(self.controlArea, self, "TargetClassIndex", " Target Class ", addSpace=True, tooltip='Select target (prediction) class in the model.', callback = self.setTarget)

        self.alignRadio = OWGUI.radioButtonsInBox(self.controlArea, self,  'alignType', ['Align left', 'Align by zero influence'], box='Attribute placement',
                                                  tooltips=['Attributes in nomogram are left aligned', 'Attributes are not aligned, top scale represents true (normalized) regression coefficient value'],
                                                  addSpace=True,
                                                  callback=self.showNomogram)
        self.verticalSpacingLabel = OWGUI.spin(self.alignRadio, self, 'verticalSpacing', 15, 200, label = 'Vertical spacing:',  orientation = 0, tooltip='Define space (pixels) between adjacent attributes.', callback = self.showNomogram)

        self.ContRadio = OWGUI.radioButtonsInBox(self.controlArea, self, 'contType',   ['1D projection', '2D curve'], 'Continuous attributes',
                                tooltips=['Continuous attribute are presented on a single scale', 'Two dimensional space is used to present continuous attributes in nomogram.'],
                                addSpace=True,
                                callback=[lambda:self.verticalSpacingContLabel.setDisabled(not self.contType), self.showNomogram])

        self.verticalSpacingContLabel = OWGUI.spin(OWGUI.indentedBox(self.ContRadio, sep=OWGUI.checkButtonOffsetHint(self.ContRadio.buttons[-1])), self, 'verticalSpacingContinuous', 15, 200, label = "Height", orientation=0, tooltip='Define space (pixels) between adjacent 2d presentation of attributes.', callback = self.showNomogram)
        self.verticalSpacingContLabel.setDisabled(not self.contType)

        self.yAxisRadio = OWGUI.radioButtonsInBox(self.controlArea, self, 'yAxis', ['Point scale', 'Log odds ratios'], 'Scale',
                                tooltips=['values are normalized on a 0-100 point scale','values on top axis show log-linear contribution of attribute to full model'],
                                addSpace=True,
                                callback=self.showNomogram)

        layoutBox = OWGUI.widgetBox(self.controlArea, "Display", orientation=1, addSpace=True)

        self.probabilityCheck = OWGUI.checkBox(layoutBox, self, 'probability', 'Show prediction',  tooltip='', callback = self.setProbability)

        self.CICheck, self.CILabel = OWGUI.checkWithSpin(layoutBox, self, 'Confidence intervals (%):', min=1, max=99, step = 1, checked='confidence_check', value='confidence_percent', checkCallback=self.showNomogram, spinCallback = self.showNomogram)

        self.histogramCheck, self.histogramLabel = OWGUI.checkWithSpin(layoutBox, self, 'Show histogram, size', min=1, max=30, checked='histogram', value='histogram_size', step = 1, tooltip='-(TODO)-', checkCallback=self.showNomogram, spinCallback = self.showNomogram)

        OWGUI.separator(layoutBox)
        self.sortOptions = ["No sorting", "Absolute importance", "Positive influence", "Negative influence"]
        self.sortBox = OWGUI.comboBox(layoutBox, self, "sort_type", label="Sort by ", items=self.sortOptions, callback = self.sortNomogram, orientation="horizontal")


        OWGUI.rubber(self.controlArea)

        self.connect(self.graphButton, SIGNAL("clicked()"), self.menuItemPrinter)



        #add a graph widget
        self.header = OWNomogramHeader(None, self.mainArea)
        self.header.setFixedHeight(60)
        self.header.setVerticalScrollBarPolicy(Qt.ScrollBarAlwaysOff)
        self.header.setHorizontalScrollBarPolicy(Qt.ScrollBarAlwaysOff)
        self.graph = OWNomogramGraph(self.bnomogram, self.mainArea)
        self.graph.setMinimumWidth(200)
        self.graph.setHorizontalScrollBarPolicy(Qt.ScrollBarAlwaysOff)
        self.footer = OWNomogramHeader(None, self.mainArea)
        self.footer.setFixedHeight(60*2+10)
        self.footer.setVerticalScrollBarPolicy(Qt.ScrollBarAlwaysOff)
        self.footer.setHorizontalScrollBarPolicy(Qt.ScrollBarAlwaysOff)

        self.mainArea.layout().addWidget(self.header)
        self.mainArea.layout().addWidget(self.graph)
        self.mainArea.layout().addWidget(self.footer)
        self.resize(700,500)
        #self.repaint()
        #self.update()

        # mouse pressed flag
        self.mousepr = False

# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import radioButtonsInBox [as 别名]
    def __init__(self, parent=None, signalManager=None,
                 title="Venn Diagram"):
        super(OWVennDiagram, self).__init__(parent, signalManager, title,
                                            wantGraph=True)

        self.autocommit = False
        # Selected disjoint subset indices
        self.selection = []

        # Stored input set hints
        # {(index, inputname, attributes): (selectedattrname, itemsettitle)}
        # The 'selectedattrname' can be None
        self.inputhints = {}

        # Use identifier columns for instance matching
        self.useidentifiers = 1

        self.loadSettings()

        # Output changed flag
        self._changed = False
        # Diagram update is in progress
        self._updating = False
        # Input update is in progress
        self._inputUpdate = False
        # All input tables have the same domain.
        self.samedomain = True
        # Input datasets in the order they were 'connected'.
        self.data = OrderedDict()
        # Extracted input item sets in the order they were 'connected'
        self.itemsets = OrderedDict()

        # GUI
        box = OWGUI.widgetBox(self.controlArea, "Info")
        self.info = OWGUI.widgetLabel(box, "No data on input\n")

        self.identifiersBox = OWGUI.radioButtonsInBox(
            self.controlArea, self, "useidentifiers", [],
            box="Data Instance Identifiers",
            callback=self._on_useidentifiersChanged
        )
        self.useequalityButton = OWGUI.appendRadioButton(
            self.identifiersBox, self, "useidentifiers",
            "Use instance equality"
        )
        rb = OWGUI.appendRadioButton(
            self.identifiersBox, self, "useidentifiers",
            "Use identifiers"
        )
        self.inputsBox = OWGUI.indentedBox(
            self.identifiersBox, sep=OWGUI.checkButtonOffsetHint(rb)
        )
        self.inputsBox.setEnabled(self.useidentifiers == 1)

        for i in range(5):
            box = OWGUI.widgetBox(self.inputsBox, "Data set #%i" % (i + 1),
                                  flat=True)
            model = OWItemModels.VariableListModel(parent=self)
            cb = QComboBox()
            cb.setModel(model)
            cb.activated[int].connect(self._on_inputAttrActivated)
            box.setEnabled(False)
            # Store the combo in the box for later use.
            box.combo_box = cb
            box.layout().addWidget(cb)

        OWGUI.rubber(self.controlArea)

        box = OWGUI.widgetBox(self.controlArea, "Output")
        cb = OWGUI.checkBox(box, self, "autocommit", "Commit on any change")
        b = OWGUI.button(box, self, "Commit", callback=self.commit,
                         default=True)
        OWGUI.setStopper(self, b, cb, "_changed", callback=self.commit)

        # Main area view
        self.scene = QGraphicsScene()
        self.view = QGraphicsView(self.scene)
        self.view.setRenderHint(QPainter.Antialiasing)
        self.view.setBackgroundRole(QPalette.Window)
        self.view.setFrameStyle(QGraphicsView.StyledPanel)

        self.mainArea.layout().addWidget(self.view)
        self.vennwidget = VennDiagram()
        self.vennwidget.resize(400, 400)
        self.vennwidget.itemTextEdited.connect(self._on_itemTextEdited)
        self.scene.selectionChanged.connect(self._on_selectionChanged)

        self.scene.addItem(self.vennwidget)

        self.resize(self.controlArea.sizeHint().width() + 550,
                    max(self.controlArea.sizeHint().height(), 550))

        self._queue = []
        self.graphButton.clicked.connect(self.saveImage)

# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import radioButtonsInBox [as 别名]
    def __init__(self, parent=None, signalManager=None,
                 title="Molecule visualizer"):
        super(OWMoleculeVisualizer, self).__init__(parent, signalManager, title)

        self.colorFragments = 1
        self.showFragments = 0
        self.selectedFragment = ""
        self.moleculeSmiles = []
        self.fragmentSmiles = []
        self.defFragmentSmiles = []
        self.smiles_var = 0
        self.moleculeTitleAttr = 0
        self.moleculeTitleAttributeList = []
        self.selectedMoleculeTitleAttrs = []
        self.fragmentSmilesAttr = 0
        self.imageSize = 200
        self.numColumns = 4
        self.commitOnChange = 0

        ## GUI
        box = OWGUI.widgetBox(self.controlArea, "Info", addSpace=True)
        self.infoLabel = OWGUI.label(box, self, "Chemicals:")
        box = OWGUI.radioButtonsInBox(
            self.controlArea, self, "showFragments",
            ["Show molecules", "Show fragments"], "Show",
            callback=self.updateitems
        )

        self.showFragmentsRadioButton = box.buttons[-1]
        self.markFragmentsCheckBox = OWGUI.checkBox(
            box, self, "colorFragments", "Mark fragments",
            callback=self._update
        )
        box.setSizePolicy(
            QSizePolicy(QSizePolicy.Minimum, QSizePolicy.Maximum))
        OWGUI.separator(self.controlArea)

        self.moleculeSmilesCombo = OWGUI.comboBox(
            self.controlArea, self, "smiles_var",
            "Molecule SMILES Attribute",
            callback=self.updateitems
        )
        self.moleculeSmilesCombo.box.setSizePolicy(
            QSizePolicy(QSizePolicy.Minimum, QSizePolicy.Maximum)
        )
        self.smiles_var_model = VariableListModel(parent=self)
        self.moleculeSmilesCombo.setModel(self.smiles_var_model)

        OWGUI.separator(self.controlArea)
        box = OWGUI.widgetBox(self.controlArea, "Molecule Title Attributes",
                              addSpace=True)

        self.title_var_view = QListView(
            selectionMode=QListView.ExtendedSelection
        )
        self.title_var_model = VariableListModel(parent=self)
        self.title_var_view.setModel(self.title_var_model)
        self.title_var_view.selectionModel().selectionChanged.connect(
            self._title_selection_changed
        )
        box.layout().addWidget(self.title_var_view)

        OWGUI.separator(self.controlArea)
        self.fragmentSmilesCombo = OWGUI.comboBox(
            self.controlArea, self, "fragmentSmilesAttr",
            "Fragment SMILES Attribute",
            callback=self.updateFragmentsListBox
        )

        self.fragmentSmilesCombo.setModel(VariableListModel(parent=self))
        self.fragmentSmilesCombo.box.setSizePolicy(
            QSizePolicy(QSizePolicy.Minimum, QSizePolicy.Maximum)
        )
        OWGUI.separator(self.controlArea)
        box = OWGUI.spin(self.controlArea, self, "imageSize", 50, 500, 10,
                         box="Image Size", callback=self._image_size_changed)

        box.setSizePolicy(
            QSizePolicy(QSizePolicy.Minimum, QSizePolicy.Maximum))

        OWGUI.separator(self.controlArea)
        box = OWGUI.widgetBox(self.controlArea, "Selection", addSpace=True)
        OWGUI.checkBox(box, self, "commitOnChange", "Commit on change")

        self.selectMarkedMoleculesButton = OWGUI.button(
            box, self, "Select &matched molecules", self.select_marked
        )
        OWGUI.button(box, self, "&Commit", callback=self.commit, default=True)
        OWGUI.separator(self.controlArea)
        OWGUI.rubber(self.controlArea)

        spliter = QSplitter(Qt.Vertical)
        self.scrollArea = ScrollArea(spliter)

        self.grid = GridWidget()
        self.grid.selectionChanged.connect(self._on_selection_changed)

        self.scrollArea.setWidget(self.grid)
        self.scrollArea.setWidgetResizable(True)
        self.mainArea.layout().addWidget(spliter)
#.........这里部分代码省略.........

# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import radioButtonsInBox [as 别名]
    def __init__(self, parallelWidget, parent=None, signalManager=None):
        OWWidget.__init__(self, parent, signalManager, "Parallel Optimization Dialog", False)
        self.setCaption("Parallel Optimization Dialog")
        self.parallelWidget = parallelWidget

        self.optimizationMeasure = 0
        self.attributeCount = 5
        self.numberOfAttributes = 6
        self.fileName = ""
        self.lastSaveDirName = os.getcwd() + "/"
        self.fileBuffer = []
        self.projections = []
        self.allResults = []
        self.canOptimize = 0
        self.orderAllAttributes = 1  # do we wish to order all attributes or find just an interesting subset
        self.worstVal = -1  # used in heuristics to stop the search in uninteresting parts of the graph

        self.loadSettings()

        self.measureBox = OWGUI.radioButtonsInBox(self.controlArea, self, "optimizationMeasure",
                                                  ["Correlation", "VizRank"], box="Select optimization measure",
                                                  callback=self.updateGUI)
        self.vizrankSettingsBox = OWGUI.widgetBox(self.controlArea, "VizRank settings")
        self.optimizeBox = OWGUI.widgetBox(self.controlArea, "Optimize")
        self.manageBox = OWGUI.widgetBox(self.controlArea, "Manage results")
        self.resultsBox = OWGUI.widgetBox(self.mainArea, "Results")

        self.resultList = OWGUI.listBox(self.resultsBox, self)
        self.resultList.setMinimumSize(200, 200)
        self.connect(self.resultList, SIGNAL("itemSelectionChanged()"), self.showSelectedAttributes)

        # remove non-existing files
        names = []
        for i in range(len(self.fileBuffer) - 1, -1, -1):
            (short, longName) = self.fileBuffer[i]
            if not os.path.exists(longName):
                self.fileBuffer.remove((short, longName))
            else:
                names.append(short)
        names.append("(None)")
        self.fileName = "(None)"

        self.hbox1 = OWGUI.widgetBox(self.vizrankSettingsBox, "VizRank projections file", orientation="horizontal")
        self.vizrankFileCombo = OWGUI.comboBox(self.hbox1, self, "fileName", items=names,
                                               tooltip="File that contains information about interestingness of scatterplots\n"
                                                       "generated by VizRank method in scatterplot widget",
                                               callback=self.changeProjectionFile, sendSelectedValue=1, valueType=str)
        self.browseButton = OWGUI.button(self.hbox1, self, "...", callback=self.loadProjections)
        self.browseButton.setMaximumWidth(20)

        self.resultsInfoBox = OWGUI.widgetBox(self.vizrankSettingsBox, "VizRank parameters")
        self.kNeighborsLabel = OWGUI.widgetLabel(self.resultsInfoBox, "Number of neighbors (k):")
        self.percentDataUsedLabel = OWGUI.widgetLabel(self.resultsInfoBox, "Percent of data used:")
        self.testingMethodLabel = OWGUI.widgetLabel(self.resultsInfoBox, "Testing method used:")
        self.qualityMeasureLabel = OWGUI.widgetLabel(self.resultsInfoBox, "Quality measure used:")

        self.allAttributesRadio = QRadioButton("Order all attributes", self.optimizeBox)
        self.optimizeBox.layout().addWidget(self.allAttributesRadio)
        self.connect(self.allAttributesRadio, SIGNAL("clicked()"), self.setAllAttributeRadio)
        box = OWGUI.widgetBox(self.optimizeBox, orientation="horizontal")
        self.subsetAttributeRadio = QRadioButton("Find subsets of", box)
        box.layout().addWidget(self.subsetAttributeRadio)
        self.connect(self.subsetAttributeRadio, SIGNAL("clicked()"), self.setSubsetAttributeRadio)
        self.subsetAttributeEdit = OWGUI.lineEdit(box, self, "numberOfAttributes", valueType=int)
        self.subsetAttributeEdit.setMaximumWidth(30)
        OWGUI.widgetLabel(box, "attributes")

        self.startOptimizationButton = OWGUI.button(self.optimizeBox, self, "Start Optimization",
                                                    callback=self.startOptimization)
        f = self.startOptimizationButton.font()
        f.setBold(1)
        self.startOptimizationButton.setFont(f)
        self.stopOptimizationButton = OWGUI.button(self.optimizeBox, self, "Stop Evaluation",
                                                   callback=self.stopOptimizationClick)
        self.stopOptimizationButton.setFont(f)
        self.stopOptimizationButton.hide()
        self.connect(self.stopOptimizationButton, SIGNAL("clicked()"), self.stopOptimizationClick)

        self.clearButton = OWGUI.button(self.manageBox, self, "Clear Results", self.clearResults)
        self.loadButton = OWGUI.button(self.manageBox, self, "Load", self.loadResults)
        self.saveButton = OWGUI.button(self.manageBox, self, "Save", self.saveResults)
        self.closeButton = OWGUI.button(self.manageBox, self, "Close Dialog", self.hide)

        self.changeProjectionFile()
        self.updateGUI()
        if self.orderAllAttributes:
            self.setAllAttributeRadio()
        else:
            self.setSubsetAttributeRadio()