本文整理汇总了Python中Orange.OrangeWidgets.OWGUI.button方法的典型用法代码示例。如果您正苦于以下问题:Python OWGUI.button方法的具体用法?Python OWGUI.button怎么用?Python OWGUI.button使用的例子?那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Orange.OrangeWidgets.OWGUI
的用法示例。
在下文中一共展示了OWGUI.button方法的15个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager = None):
OWWidget.__init__(self, parent, signalManager, "Save Data Files", wantMainArea = 0, resizingEnabled = 1)
self.inputs = [("Structured Data", DataFiles, self.structuredData, Default)]
self.outputs = []
self.dataStructure = None
# Settings
self.recentDirs=[]
self.selectedDirName = "(none)"
self.loadSettings()
# GUI
rfbox = OWGUI.widgetBox(self.controlArea, "Directory", orientation="horizontal", addSpace = True)
self.dircombo = QComboBox(rfbox)
rfbox.layout().addWidget(self.dircombo)
browse = OWGUI.button(rfbox, self, '&...', callback = self.browseDirectory, disabled=0)
browse.setMaximumWidth(25)
# info
box = OWGUI.widgetBox(self.controlArea, "Info", addSpace = True)
self.infoa = OWGUI.widgetLabel(box, 'No data on input.')
# Output
box = OWGUI.widgetBox(self.controlArea, "Output", addSpace = True)
self.save = OWGUI.button(box, self, '&Save', callback = self.saveData, disabled=1)
self.adjustSize()
# initial settings
self.recentDirs=filter(os.path.exists, self.recentDirs)
self.setDirlist()
self.dircombo.setCurrentIndex(0)
self.resize(300,self.height())
示例2: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager = None, loaddata=1):
OWWidget.__init__(self, parent, signalManager, 'Data Files', wantMainArea = 0, resizingEnabled = 1)
self.callbackDeposit = []
self.inputs = []
self.outputs = [("Examples", ExampleTable), ("Structured Data", DataFiles)]
self.dataStructure = []
self.datasets = None
self.lastSentIds = []
# Settings
self.recentDirs=[]
self.selectedDirName = "None"
self.applyOnChange = 0
self.loadSettings()
# CONTROLS
box = OWGUI.widgetBox(self.controlArea, "Directory", addSpace = True, orientation=0)
self.dircombo=QComboBox(box)
box.layout().addWidget(self.dircombo)
button = OWGUI.button(box, self, '...', callback = self.browseDirectory, disabled=0)
button.setMaximumWidth(25)
# connecting GUI to code
self.connect(self.dircombo,SIGNAL('activated(int)'),self.selectDir)
# info
box = OWGUI.widgetBox(self.controlArea, "Info", addSpace = True)
self.infoa = OWGUI.widgetLabel(box, 'No data loaded.')
self.infob = OWGUI.widgetLabel(box, '')
self.infoc = OWGUI.widgetLabel(box, '')
# LIST VIEW
frmListView = OWGUI.widgetBox(self.controlArea, None, addSpace = True)
self.tree = QTreeWidget(frmListView)
self.tree.setSelectionMode(QAbstractItemView.MultiSelection)
self.tree.setHeaderLabel("Directory/Data File")
frmListView.layout().addWidget(self.tree)
self.connect(self.tree,SIGNAL('itemSelectionChanged()'),self.selectionChanged)
# Output
box = OWGUI.widgetBox(self.controlArea, "Output", addSpace = True)
OWGUI.checkBox(box, self, 'applyOnChange', 'Commit data on selection change')
self.commitBtn = OWGUI.button(box, self, "Commit", callback=self.sendData, disabled=1)
self.resize(300,600)
# initial settings
self.recentDirs=filter(os.path.exists,self.recentDirs)
self.setDirlist()
self.dircombo.setCurrentIndex(0)
if self.recentDirs!=[] and loaddata:
self.loadData(self.recentDirs[0])
示例3: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self,parent=None, signalManager = None):
OWWidget.__init__(self, parent, signalManager, "&Display Motifs", 0)
# set default settings
self.colorBy = None
self.pvalThresholdIndex = None
self.pvalThreshold = None
#load settings
self.loadSettings()
# GUI
self.graph = OWGraph(self.mainArea)
self.graph.setYRlabels(None)
self.graph.enableGridXB(0)
self.graph.enableGridYL(1)
self.graph.setAxisMaxMinor(QwtPlot.xBottom, 10)
self.graph.setAxisMaxMajor(QwtPlot.xBottom, 10)
self.graph.setAxisAutoScale(QwtPlot.xBottom)
self.graph.setAxisScale(QwtPlot.xBottom, -1020, 0, 0)
self.mainArea.layout().addWidget(self.graph)
# inputs
# data and graph temp variables
self.inputs = [("Examples", ExampleTable, self.cdata, Default), ("Genes", list, self.newGeneList, Default), ("Motifs", list, self.newMotifList, Default)]
self.data = None
self.motifLines = []
self.visibleValues = []
self.valueToCurve = {}
self.allGenes = [] ## genes displayed always in same order
self.geneList = [] ## selected genes
self.motifList = [] ## selected motifs
self.valuesPresentInData = []
self.clusterPostProbThreshold = 0
# GUI
self.selValues = OWGUI.widgetBox(self.controlArea, "Values")
self.selcolorBy = OWGUI.widgetBox(self.controlArea, "Color By")
self.colorByCombo = OWGUI.comboBox(self.selcolorBy, self, "colorBy",
items=[],
callback=self.colorByChanged)
self.pvalThresholdCombo = OWGUI.comboBox(self.selValues, self, "pvalThresholdIndex",
items=[],
callback=self.pvalThresholdChanged)
self.valuesQLB = QListWidget(self.selValues)
self.valuesQLB.setSelectionMode(QListWidget.MultiSelection)
self.connect(self.valuesQLB, SIGNAL("itemSelectionChanged()"), self.valuesSelectionChange)
self.selValues.layout().addWidget(self.valuesQLB)
self.unselectAllQLB = OWGUI.button(self.selValues, self, "Unselect all",
callback = self.unselAll)
示例4: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager = None):
OWWidget.__init__(self, parent, signalManager, 'Process Chip Data')
self.callbackDeposit = []
self.inputs = [("Structured Data", DataFiles, self.chipdata)]
self.outputs = [("Structured Data", DataFiles)]
self.chipdata = None; self.datasets = None
self.std = [("No preprocessing", None),
("Array-based standardization", chipstat.standardize_arrays),
("Gene-based standardization", chipstat.standardize_genes),
("First array-, then gene-based standardization", lambda e,r: chipstat.standardize_genes(chipstat.standardize_arrays(e,r),r)),
("First gene-, then array-based standardization", lambda e,r: chipstat.standardize_arrays(chipstat.standardize_genes(e,r),r))]
# Settings
self.data = None
self.preStdMethod = 0; self.preStdRob = 1
self.postStdMethod = 0; self.postStdRob = 1
self.mergeType = 0
self.commitOnChange = 0
self.loadSettings()
# GUI
# info
box = QVGroupBox("Info", self.controlArea)
self.infoa = QLabel('No data on input.', box)
self.infob = QLabel('', box)
# preprocessing
OWGUI.separator(self.controlArea)
box = QVGroupBox("Preprocessing", self.controlArea)
labels = [x[0] for x in self.std]
OWGUI.comboBox(box, self, 'preStdMethod', label=None, labelWidth=None, orientation='vertical', items=labels, callback=self.selectionChange)
self.preRobBtn = OWGUI.checkBox(box, self, "preStdRob", "Robust standardization", callback=self.selectionChange)
# merge
OWGUI.separator(self.controlArea)
self.mergeTypes = [(0, "No merging"), ('mean', 'Mean'), ('median', 'Median'), ('min', 'Minimum expression'), ('max', 'Maximum expression')]
labels = [x[1] for x in self.mergeTypes]
OWGUI.radioButtonsInBox(self.controlArea, self, 'mergeType', labels, box='Merge Replicas', tooltips=None, callback=self.selectionChange)
# postprocessing
OWGUI.separator(self.controlArea)
self.boxPostproc = QVGroupBox("Postprocessing", self.controlArea)
labels = [x[0] for x in self.std]
OWGUI.comboBox(self.boxPostproc, self, 'postStdMethod', label=None, labelWidth=None, orientation='vertical', items=labels, callback=self.selectionChange)
self.postRobBtn = OWGUI.checkBox(self.boxPostproc, self, "postStdRob", "Robust standardization", callback=self.selectionChange)
# output
OWGUI.separator(self.controlArea)
box = QVGroupBox("Output", self.controlArea)
OWGUI.checkBox(box, self, 'commitOnChange', 'Commit data on selection change')
self.commitBtn = OWGUI.button(box, self, "Commit", callback=self.selectionChange, disabled=1)
self.setBtnsState()
self.resize(100,100)
示例5: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager=None, name="dictyExpress"):
OWWidget.__init__(self, parent, signalManager, name)
self.outputs = [("Example table", ExampleTable)]
self.serverToken = ""
self.server = obiDicty.defaddress
self.platform = None
self.selectedExperiments = []
self.buffer = obiDicty.CacheSQLite(bufferfile)
self.searchString = ""
self.excludeconstant = False
box = OWGUI.widgetBox(self.controlArea, "Cache")
OWGUI.button(box, self, "Clear cache", callback=self.clear_buffer)
OWGUI.checkBox(self.controlArea, self, "excludeconstant", "Exclude labels with constant values" )
OWGUI.button(self.controlArea, self, "&Commit", callback=self.Commit)
box = OWGUI.widgetBox(self.controlArea, "Server")
OWGUI.lineEdit(box, self, "serverToken","Token", callback=self.Connect)
OWGUI.rubber(self.controlArea)
OWGUI.lineEdit(self.mainArea, self, "searchString", "Search", callbackOnType=True, callback=self.SearchUpdate)
self.experimentsWidget = QTreeWidget()
self.experimentsWidget.setHeaderLabels(["Strain", "Treatment", "Growth condition", "Platform", "N", "Chips"])
self.experimentsWidget.setSelectionMode(QTreeWidget.ExtendedSelection)
self.experimentsWidget.setRootIsDecorated(False)
self.experimentsWidget.setSortingEnabled(True)
## self.experimentsWidget.setAlternatingRowColors(True)
self.mainArea.layout().addWidget(self.experimentsWidget)
self.loadSettings()
self.dbc = None
QTimer.singleShot(0, self.UpdateExperiments)
self.resize(800, 600)
示例6: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager = None, name='Approximate Profiles'):
self.callbackDeposit = [] # deposit for OWGUI callback functions
OWWidget.__init__(self, parent, signalManager, name)
self._data = None # exampleTable
self._dataN = None # 2d numeric array
self._chipdata = None # [(dirname0, [et0, et1, ...]), ...]
self._chipdataN = None # 3d numeric array
self.kernel = 0
self.kernels = ["Orthogonal polynomials", "Trigonometric functions"]
self.kernelSize = None
self.kernelSizes = [ ["Const"] + map(lambda x: "degree <= %i"%x, range(1,99)),
["Const", "cos x", "sin x"] + reduce(lambda x,y: x+[y[0],y[1]], map(lambda i: ("cos %ix"%i, "sin %ix"%i), range(2,99)), [])
]
self.useSignificance = 0
self.alpha = 3
self.alphas = [0.0001, 0.001, 0.01, 0.05, 0.1, 0.2, 0.5]
self.commitOnChange = 1
# Settings
self.loadSettings()
# GUI: info, comboKernelSize, cbUseSignificance, vboxSignificance, commitBtn
# info
box = QVGroupBox("Info", self.controlArea)
self.infoa = QLabel("No examples on input", box)
OWGUI.separator(box,250)
self.infob = QLabel("No structured data on input", box)
OWGUI.separator(self.controlArea)
# kernel selection
box = QVGroupBox("Kernel functions", self.controlArea)
OWGUI.comboBox(box, self, "kernel", items=self.kernels, callback=self.kernelChange)
OWGUI.separator(self.controlArea)
# kernel settings
box = QVGroupBox("Kernel settings", self.controlArea)
self.comboKernelSize = OWGUI.comboBox(box, self, "kernelSize", callback=self.kernelSizeChange, label="Number of kernel functions", labelWidth=135, orientation="horizontal", valueType=int)
self.comboKernelSize.setDisabled(1)
self.cbUseSignificance = OWGUI.checkBox(box, self, "useSignificance", "Significance of coefficients (F-statistics)", callback=self.useSignificanceChange, tooltip="Use kernels with coefficients significantly different from 0.")
self.vboxSignificance = QVBox(box)
OWGUI.comboBox(self.vboxSignificance, self, "alpha", items = self.alphas, callback=self.alphaChange, label="p <", labelWidth=20, orientation="horizontal")
OWGUI.separator(self.controlArea)
# output
box = QVGroupBox("Output", self.controlArea)
OWGUI.checkBox(box, self, 'commitOnChange', 'Commit data on selection change')
self.commitBtn = OWGUI.button(box, self, "Commit", callback=self.senddata, disabled=1)
self.inputs = [("Examples", ExampleTable, self.data), ("Structured Data", DataFiles, self.chipdata)]
self.outputs = [("Approximated Examples", ExampleTable, Default), ("Approximation Coefficients", ExampleTable), ("Approximated Structured Data", DataFiles, Default), ("Structured Approximation Coefficients", DataFiles)]
self.resize(200,100)
示例7: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager = None):
OWWidget.__init__(self, parent, signalManager, 'Data Files Selector', wantMainArea = 0, resizingEnabled = 1)
self.callbackDeposit = []
self.inputs = [("Structured Data", DataFiles, self.onDataInput)]
self.outputs = [("Examples", ExampleTable), ("Structured Data", DataFiles)]
self.dataStructure = None
self.datasets = None
self.lastSentIds = []
# Settings
self.applyOnChange = 0
self.loadSettings()
# GUI
# info
box = OWGUI.widgetBox(self.controlArea, "Info", addSpace = True)
self.infoa = OWGUI.widgetLabel(box, 'No data loaded.')
self.infob = OWGUI.widgetLabel(box, '')
self.infoc = OWGUI.widgetLabel(box, '')
# LIST VIEW
frmListView = OWGUI.widgetBox(self.controlArea, None, addSpace = True)
self.tree = QTreeWidget(frmListView)
self.tree.setSelectionMode(QAbstractItemView.MultiSelection)
self.tree.setHeaderLabel("Directory/Data File")
frmListView.layout().addWidget(self.tree)
self.connect(self.tree,SIGNAL('itemSelectionChanged()'),self.selectionChanged)
# Output
box = OWGUI.widgetBox(self.controlArea, "Output", addSpace = True)
OWGUI.checkBox(box, self, 'applyOnChange', 'Commit data on selection change')
self.commitBtn = OWGUI.button(box, self, "Commit", callback=self.sendData, disabled=1)
self.resize(300,600)
示例8: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager=None, name="Normalize Expression Array"):
OWWidget.__init__(self, parent, signalManager, name, wantGraph=True)
self.inputs = [("Expression array", ExampleTable, self.setData)]
self.outputs = [("Normalized expression array", ExampleTable, Default), ("Filtered expression array", ExampleTable)]
self.selectedGroup = 0
self.selectedCenterMethod = 0
self.selectedMergeMethod = 0
self.zCutoff = 1.96
self.appendZScore = False
self.appendRIValues = False
self.autoCommit = False
self.loadSettings()
## GUI
self.infoBox = OWGUI.widgetLabel(OWGUI.widgetBox(self.controlArea, "Info", addSpace=True),
"No data on input.")
box = OWGUI.widgetBox(self.controlArea, "Split by", addSpace=True)
self.groupCombo = OWGUI.comboBox(box, self, "selectedGroup",
callback=self.onGroupSelection
)
self.centerCombo = OWGUI.comboBox(self.controlArea, self, "selectedCenterMethod",
box="Center Fold-change Using",
items=[name for name, _ in self.CENTER_METHODS],
callback=self.onCenterMethodChange,
addSpace=True
)
self.mergeCombo = OWGUI.comboBox(self.controlArea, self, "selectedMergeMethod",
box="Merge Replicates",
items=[name for name, _ in self.MERGE_METHODS],
tooltip="Select the method for replicate merging",
callback=self.onMergeMethodChange,
addSpace=True
)
box = OWGUI.doubleSpin(self.controlArea, self, "zCutoff", 0.0, 3.0, 0.01,
box="Z-Score Cutoff",
callback=[self.replotMA, self.commitIf])
OWGUI.separator(self.controlArea)
box = OWGUI.widgetBox(self.controlArea, "Ouput")
OWGUI.checkBox(box, self, "appendZScore", "Append Z-Scores",
tooltip="Append calculated Z-Scores to output",
callback=self.commitIf
)
OWGUI.checkBox(box, self, "appendRIValues", "Append Log Ratio and Intensity values",
tooltip="Append calculated Log Ratio and Intensity values to output data",
callback=self.commitIf
)
cb = OWGUI.checkBox(box, self, "autoCommit", "Commit on change",
tooltip="Commit data on any change",
callback=self.commitIf
)
b = OWGUI.button(box, self, "Commit", callback=self.commit)
OWGUI.setStopper(self, b, cb, "changedFlag", callback=self.commit)
self.connect(self.graphButton, SIGNAL("clicked()"), self.saveGraph)
OWGUI.rubber(self.controlArea)
self.graph = OWGraph(self.mainArea)
self.graph.setAxisTitle(QwtPlot.xBottom, "Intensity: log<sub>10</sub>(R*G)")
self.graph.setAxisTitle(QwtPlot.yLeft, "Log ratio: log<sub>2</sub>(R/G)")
self.graph.showFilledSymbols = True
self.mainArea.layout().addWidget(self.graph)
self.groups = []
self.split_data = None, None
self.merged_splits = None, None
self.centered = None, None
self.changedFlag = False
self.data = None
self.resize(800, 600)
示例9: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager=None, name=" GEO Data Sets"):
OWWidget.__init__(self, parent, signalManager, name)
self.selectionChanged = False
self.filterString = ""
self.datasetName = ""
## GUI
box = gui.widgetBox(self.controlArea, "Info", addSpace=True)
self.infoBox = gui.widgetLabel(box, "Initializing\n\n")
box = gui.widgetBox(self.controlArea, "Output", addSpace=True)
gui.radioButtonsInBox(box, self, "outputRows",
["Genes in rows", "Samples in rows"], "Rows",
callback=self.commitIf)
gui.checkBox(box, self, "mergeSpots", "Merge spots of same gene",
callback=self.commitIf)
gui.separator(box)
self.nameEdit = gui.lineEdit(
box, self, "datasetName", "Data set name",
tooltip="Override the default output data set name",
callback=self.onNameEdited
)
self.nameEdit.setPlaceholderText("")
if sys.version_info < (3, ):
box = gui.widgetBox(self.controlArea, "Commit", addSpace=True)
self.commitButton = gui.button(
box, self, "Commit", callback=self.commit)
cb = gui.checkBox(box, self, "autoCommit", "Commit on any change")
gui.setStopper(self, self.commitButton, cb, "selectionChanged",
self.commit)
else:
gui.auto_commit(self.controlArea, self, "autoCommit", "Commit",
box="Commit")
self.commitIf = self.commit
gui.rubber(self.controlArea)
gui.widgetLabel(self.mainArea, "Filter")
self.filterLineEdit = QLineEdit(
textChanged=self.filter
)
self.completer = TokenListCompleter(
self, caseSensitivity=Qt.CaseInsensitive
)
self.filterLineEdit.setCompleter(self.completer)
self.mainArea.layout().addWidget(self.filterLineEdit)
splitter = QSplitter(Qt.Vertical, self.mainArea)
self.mainArea.layout().addWidget(splitter)
self.treeWidget = QTreeView(splitter)
self.treeWidget.setSelectionMode(QTreeView.SingleSelection)
self.treeWidget.setRootIsDecorated(False)
self.treeWidget.setSortingEnabled(True)
self.treeWidget.setAlternatingRowColors(True)
self.treeWidget.setUniformRowHeights(True)
self.treeWidget.setEditTriggers(QTreeView.NoEditTriggers)
linkdelegate = LinkStyledItemDelegate(self.treeWidget)
self.treeWidget.setItemDelegateForColumn(1, linkdelegate)
self.treeWidget.setItemDelegateForColumn(8, linkdelegate)
self.treeWidget.setItemDelegateForColumn(
0, gui.IndicatorItemDelegate(self.treeWidget,
role=Qt.DisplayRole))
proxyModel = MySortFilterProxyModel(self.treeWidget)
self.treeWidget.setModel(proxyModel)
self.treeWidget.selectionModel().selectionChanged.connect(
self.updateSelection
)
self.treeWidget.viewport().setMouseTracking(True)
splitterH = QSplitter(Qt.Horizontal, splitter)
box = gui.widgetBox(splitterH, "Description")
self.infoGDS = gui.widgetLabel(box, "")
self.infoGDS.setWordWrap(True)
gui.rubber(box)
box = gui.widgetBox(splitterH, "Sample Annotations")
self.annotationsTree = QTreeWidget(box)
self.annotationsTree.setHeaderLabels(
["Type (Sample annotations)", "Sample count"]
)
self.annotationsTree.setRootIsDecorated(True)
box.layout().addWidget(self.annotationsTree)
self.annotationsTree.itemChanged.connect(
self.annotationSelectionChanged
)
self._annotationsUpdating = False
self.splitters = splitter, splitterH
for sp, setting in zip(self.splitters, self.splitterSettings):
sp.splitterMoved.connect(self.splitterMoved)
sp.restoreState(setting)
#.........这里部分代码省略.........
示例10: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager=None, name="Vulcano Plot"):
OWWidget.__init__(self, parent, signalManager, name, wantGraph=True)
self.inputs = [("Examples", ExampleTable, self.setData)]
self.outputs = [("Examples with selected attributes", ExampleTable)]
self.genes_in_columns = False
self.showXTitle = True
self.showYTitle = True
self.auto_commit = False
self.selection_changed_flag = False
self.target_group = None, []
self.label_selections = []
self.graph = VulcanoGraph(self)
self.connect(self.graph, SIGNAL("selectionChanged()"),
self.on_selection_changed)
self.mainArea.layout().addWidget(self.graph)
self.loadSettings()
## GUI
box = OWGUI.widgetBox(self.controlArea, "Info")
self.infoLabel = OWGUI.label(box, self, "")
self.infoLabel.setText("No data on input")
self.infoLabel2 = OWGUI.label(box, self, "")
self.infoLabel2.setText("0 selected genes")
box = OWGUI.widgetBox(self.controlArea, "Target Labels")
self.target_widget = LabelSelectionWidget(self)
self.connect(self.target_widget,
SIGNAL("selection_changed(PyQt_PyObject, PyQt_PyObject)"),
self.on_target_changed)
self.connect(self.target_widget,
SIGNAL("label_activated(int)"),
self.on_label_activated)
box.layout().addWidget(self.target_widget)
self.genesInColumnsCheck = OWGUI.checkBox(box, self, "genes_in_columns",
"Genes in columns",
callback=[self.init_from_data, self.plot])
box = OWGUI.widgetBox(self.controlArea, "Settings")
OWGUI.hSlider(box, self, "graph.symbolSize", label="Symbol size: ", minValue=2, maxValue=20, step=1, callback = self.graph.updateSymbolSize)
OWGUI.checkBox(box, self, "showXTitle", "X axis title", callback=self.setAxesTitles)
OWGUI.checkBox(box, self, "showYTitle", "Y axis title", callback=self.setAxesTitles)
toolbar = ZoomSelectToolbar(self, self.controlArea, self.graph, buttons=[ZoomSelectToolbar.IconSelect, ZoomSelectToolbar.IconZoom, ZoomSelectToolbar.IconPan])
top_layout = toolbar.layout()
top_layout.setDirection(QBoxLayout.TopToBottom)
button_layotu = QHBoxLayout()
top_layout.insertLayout(0, button_layotu)
for i in range(1, top_layout.count()):
item = top_layout.itemAt(1)
top_layout.removeItem(item)
button_layotu.addItem(item)
OWGUI.checkBox(toolbar, self, "graph.symetricSelections", "Symetric selection", callback=self.graph.reselect)
box = OWGUI.widgetBox(self.controlArea, "Commit")
b = OWGUI.button(box, self, "Commit", callback=self.commit, default=True)
cb = OWGUI.checkBox(box, self, "auto_commit", "Commit automatically")
OWGUI.setStopper(self, b, cb, "selection_changed_flag", self.commit_if)
self.connect(self.graphButton, SIGNAL("clicked()"), self.graph.saveToFile)
OWGUI.rubber(self.controlArea)
self.data = None
self.target_group = None, []
self.current_selection = []
self.graph.reselect(True)
self.resize(800, 600)
示例11: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager=None, title="Expression Profile Distances"):
OWWidget.__init__(self, parent, signalManager, title)
self.inputs = [("Example Table", ExampleTable, self.set_data)]
self.outputs = [("Distances", Orange.core.SymMatrix), ("Sorted Example Table", ExampleTable)]
self.distance_measure = 0
self.auto_commit = False
self.changed_flag = False
self.loadSettings()
########
# GUI
########
self.info_box = OWGUI.widgetLabel(
OWGUI.widgetBox(self.controlArea, "Input", addSpace=True), "No data on input\n"
)
box = OWGUI.widgetBox(self.controlArea, "Separate By", addSpace=True)
self.separate_view = QListView()
self.separate_view.setSelectionMode(QListView.MultiSelection)
box.layout().addWidget(self.separate_view)
box = OWGUI.widgetBox(self.controlArea, "Sort By", addSpace=True)
self.relevant_view = QListView()
self.relevant_view.setSelectionMode(QListView.MultiSelection)
box.layout().addWidget(self.relevant_view)
self.distance_view = OWGUI.comboBox(
self.controlArea,
self,
"distance_measure",
box="Distance Measure",
items=[d[0] for d in self.DISTANCE_FUNCTIONS],
)
OWGUI.rubber(self.controlArea)
box = OWGUI.widgetBox(self.controlArea, "Commit")
cb = OWGUI.checkBox(
box,
self,
"auto_commit",
"Commit on any change",
tooltip="Compute and send the distances on any change.",
callback=self.commit_if,
)
b = OWGUI.button(
box,
self,
"Commit",
tooltip="Compute the distances and send the output signals.",
callback=self.commit,
default=True,
)
OWGUI.setStopper(self, b, cb, "changed_flag", callback=self.commit)
self.groups_box = OWGUI.widgetBox(self.mainArea, "Groups")
self.groups_scroll_area = QScrollArea()
self.groups_box.layout().addWidget(self.groups_scroll_area)
self.data = None
self.partitions = []
self.matrix = None
self.split_groups = []
self._disable_updates = False
self.resize(800, 600)
示例12: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager=None):
OWWidget.__init__(self, parent, signalManager, "Parallel Coordinates", True)
#add a graph widget
self.graph = OWParallelGraph(self, self.mainArea)
self.mainArea.layout().addWidget(self.graph)
self.showAllAttributes = 0
self.inputs = [("Data", ExampleTable, self.setData, Default),
("Data Subset", ExampleTable, self.setSubsetData),
("Features", AttributeList, self.setShownAttributes)]
self.outputs = [("Selected Data", ExampleTable),
("Other Data", ExampleTable),
("Features", AttributeList)]
#set default settings
self.data = None
self.subsetData = None
self.autoSendSelection = 1
self.attrDiscOrder = "Unordered"
self.attrContOrder = "Unordered"
self.projections = None
self.correlationDict = {}
self.middleLabels = "Correlations"
self.attributeSelectionList = None
self.toolbarSelection = 0
self.colorSettings = None
self.selectedSchemaIndex = 0
self.graph.jitterSize = 10
self.graph.showDistributions = 1
self.graph.showStatistics = 0
self.graph.showAttrValues = 1
self.graph.useSplines = 0
self.graph.enabledLegend = 1
#load settings
self.loadSettings()
#GUI
self.tabs = OWGUI.tabWidget(self.controlArea)
self.GeneralTab = OWGUI.createTabPage(self.tabs, "Main")
self.SettingsTab = OWGUI.createTabPage(self.tabs, "Settings")
self.createShowHiddenLists(self.GeneralTab, callback=self.updateGraph)
self.connect(self.shownAttribsLB, SIGNAL('itemDoubleClicked(QListWidgetItem*)'), self.flipAttribute)
self.optimizationDlg = ParallelOptimization(self, signalManager=self.signalManager)
self.optimizationDlgButton = OWGUI.button(self.GeneralTab, self, "Optimization Dialog",
callback=self.optimizationDlg.reshow, debuggingEnabled=0)
self.zoomSelectToolbar = OWToolbars.ZoomSelectToolbar(self, self.GeneralTab, self.graph, self.autoSendSelection,
buttons=(1, 2, 0, 7, 8))
self.connect(self.zoomSelectToolbar.buttonSendSelections, SIGNAL("clicked()"), self.sendSelections)
#connect controls to appropriate functions
self.connect(self.graphButton, SIGNAL("clicked()"), self.graph.saveToFile)
# ####################################
# SETTINGS functionality
box = OWGUI.widgetBox(self.SettingsTab, "Transparency")
OWGUI.hSlider(box, self, 'graph.alphaValue', label="Examples: ", minValue=0, maxValue=255, step=10,
callback=self.updateGraph, tooltip="Alpha value used for drawing example lines")
OWGUI.hSlider(box, self, 'graph.alphaValue2', label="Rest: ", minValue=0, maxValue=255, step=10,
callback=self.updateGraph, tooltip="Alpha value used to draw statistics, example subsets, ...")
box = OWGUI.widgetBox(self.SettingsTab, "Jittering Options")
OWGUI.comboBox(box, self, "graph.jitterSize", label='Jittering size (% of size): ', orientation='horizontal',
callback=self.setJitteringSize, items=self.jitterSizeNums, sendSelectedValue=1, valueType=float)
# visual settings
box = OWGUI.widgetBox(self.SettingsTab, "Visual Settings")
OWGUI.checkBox(box, self, 'graph.showAttrValues', 'Show attribute values', callback=self.updateGraph)
OWGUI.checkBox(box, self, 'graph.useAntialiasing', 'Use antialiasing', callback=self.updateGraph)
OWGUI.checkBox(box, self, 'graph.useSplines', 'Show splines', callback=self.updateGraph,
tooltip="Show lines using splines")
OWGUI.checkBox(box, self, 'graph.enabledLegend', 'Show legend', callback=self.updateGraph)
box = OWGUI.widgetBox(self.SettingsTab, "Axis Distance")
resizeColsBox = OWGUI.widgetBox(box, 0, "horizontal", 0)
OWGUI.label(resizeColsBox, self, "Increase/decrease distance: ")
OWGUI.toolButton(resizeColsBox, self, "+", callback=self.increaseAxesDistance,
tooltip="Increase the distance between the axes", width=30, height=20)
OWGUI.toolButton(resizeColsBox, self, "-", callback=self.decreaseAxesDistance,
tooltip="Decrease the distance between the axes", width=30, height=20)
OWGUI.rubber(resizeColsBox)
OWGUI.checkBox(box, self, "graph.autoUpdateAxes", "Auto scale X axis",
tooltip="Auto scale X axis to show all visualized attributes", callback=self.updateGraph)
box = OWGUI.widgetBox(self.SettingsTab, "Statistical Information")
OWGUI.comboBox(box, self, "graph.showStatistics", label="Statistics: ", orientation="horizontal", labelWidth=90,
items=["No statistics", "Means, deviations", "Median, quartiles"], callback=self.updateGraph,
sendSelectedValue=0, valueType=int)
OWGUI.comboBox(box, self, "middleLabels", label="Middle labels: ", orientation="horizontal", labelWidth=90,
items=["No labels", "Correlations", "VizRank"], callback=self.updateGraph,
tooltip="The information do you wish to view on top in the middle of coordinate axes",
sendSelectedValue=1, valueType=str)
OWGUI.checkBox(box, self, 'graph.showDistributions', 'Show distributions', callback=self.updateGraph,
#.........这里部分代码省略.........
示例13: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager=None, title="Gene Network"):
super(OWGeneNetwork, self).__init__(
parent, signalManager, title, wantMainArea=False,
resizingEnabled=False
)
self.taxid = "9606"
self.gene_var_index = -1
self.use_attr_names = False
self.network_source = 1
self.include_neighborhood = True
self.autocommit = False
self.min_score = 0.9
self.loadSettings()
self.taxids = taxonomy.common_taxids()
self.current_taxid_index = self.taxids.index(self.taxid)
self.data = None
self.geneinfo = None
self.nettask = None
self._invalidated = False
box = OWGUI.widgetBox(self.controlArea, "Info")
self.info = OWGUI.widgetLabel(box, "No data on input\n")
box = OWGUI.widgetBox(self.controlArea, "Organism")
self.organism_cb = OWGUI.comboBox(
box, self, "current_taxid_index",
items=map(taxonomy.name, self.taxids),
callback=self._update_organism
)
box = OWGUI.widgetBox(self.controlArea, "Genes")
self.genes_cb = OWGUI.comboBox(
box, self, "gene_var_index", callback=self._update_query_genes
)
self.varmodel = OWItemModels.VariableListModel()
self.genes_cb.setModel(self.varmodel)
OWGUI.checkBox(
box, self, "use_attr_names",
"Use attribute names",
callback=self._update_query_genes
)
box = OWGUI.widgetBox(self.controlArea, "Network")
OWGUI.comboBox(
box, self, "network_source",
items=[s.name for s in SOURCES],
callback=self._on_source_db_changed
)
OWGUI.checkBox(
box, self, "include_neighborhood",
"Include immediate gene neighbors",
callback=self.invalidate
)
self.score_spin = OWGUI.doubleSpin(
box, self, "min_score", 0.0, 1.0, step=0.001,
label="Minimal edge score",
callback=self.invalidate
)
self.score_spin.setEnabled(SOURCES[self.network_source].score_filter)
box = OWGUI.widgetBox(self.controlArea, "Commit")
OWGUI.button(box, self, "Commit", callback=self.commit, default=True)
self.executor = ThreadExecutor()
示例14: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager = None, name='GSEA'):
OWWidget.__init__(self, parent, signalManager, name)
self.inputs = [("Examples", ExampleTable, self.setData)]
self.outputs = [("Examples with selected genes only", ExampleTable), ("Results", ExampleTable), ("Distance Matrix", orange.SymMatrix) ]
self.res = None
self.dm = None
self.name = 'GSEA'
self.minSubsetSize = 3
self.minSubsetSizeC = True
self.maxSubsetSize = 1000
self.maxSubsetSizeC = True
self.minSubsetPart = 10
self.minSubsetPartC = True
self.perms = 100
self.csgm = False
self.gsgo = False
self.gskegg = False
self.buildDistances = False
self.selectedPhenVar = 0
self.organismIndex = 0
self.atLeast = 3
self.permutationTypes = [("Phenotype", "p"),("Gene", "g") ]
self.ptype = 0
self.correlationTypes = [ ("Signal2Noise", "s2n") ]
self.ctype = 0
self.data = None
self.geneSets = {}
self.tabs = OWGUI.tabWidget(self.controlArea)
ca = OWGUI.createTabPage(self.tabs, "Basic")
box = OWGUI.widgetBox(ca, 'Organism')
#FROM KEGG WIDGET - organism selection
self.organismTaxids = []
self.organismComboBox = cb = OWGUI.comboBox(box, self, "organismIndex", items=[], debuggingEnabled=0) #changed
cb.setMaximumWidth(200)
#OWGUI.checkBox(box, self, "csgm", "Case sensitive gene matching")
box2 = OWGUI.widgetBox(ca, "Descriptors")
self.phenCombo = OWGUI.comboBox(box2, self, "selectedPhenVar", items=[], callback=self.phenComboChange, label="Phenotype:")
self.geneCombo = OWGUI.comboBox(box2, self, "selectedGeneVar", items=[], label = "Gene:")
self.allowComboChangeCallback = False
ma = self.mainArea
self.listView = QTreeWidget(ma)
ma.layout().addWidget(self.listView)
self.listView.setAllColumnsShowFocus(1)
self.listView.setColumnCount(9)
self.listView.setHeaderLabels(["Collection", "Geneset", "NES", "ES", "P-value", "FDR", "Size", "Matched Size", "Genes"])
self.listView.header().setStretchLastSection(True)
self.listView.header().setClickable(True)
self.listView.header().setSortIndicatorShown(True)
self.listView.setSortingEnabled(True)
#self.listView.header().setResizeMode(0, QHeaderView.Stretch)
self.listView.setSelectionMode(QAbstractItemView.NoSelection)
self.connect(self.listView, SIGNAL("itemSelectionChanged()"), self.newPathwaySelected)
OWGUI.separator(ca)
OWGUI.widgetLabel(ca, "Phenotype selection:")
self.psel = PhenotypesSelection(ca)
self.resize(600,50)
OWGUI.separator(ca)
OWGUI.checkBox(ca, self, "buildDistances", "Compute geneset distances")
self.btnApply = OWGUI.button(ca, self, "&Compute", callback = self.compute, disabled=0)
fileBox = OWGUI.widgetBox(ca, orientation='horizontal')
OWGUI.button(fileBox, self, "Load", callback = self.loadData, disabled=0, debuggingEnabled=0)
OWGUI.button(fileBox, self, "Save", callback = self.saveData, disabled=0, debuggingEnabled=0)
#ca.layout().addStretch(1)
ca = OWGUI.createTabPage(self.tabs, "Gene sets")
box = OWGUI.widgetBox(ca)
self.gridSel = []
self.geneSel = [] #FIXME temporary disabled - use the same as in new "David" widget
self.lbgs = OWGUI.listBox(box, self, "gridSel", "geneSel", selectionMode = QListWidget.MultiSelection)
OWGUI.button(box, self, "From &File", callback = self.addCollection, disabled=0, debuggingEnabled=0)
box = OWGUI.widgetBox(box, "Additional sources:")
OWGUI.checkBox(box, self, "gskegg", "KEGG pathways")
OWGUI.checkBox(box, self, "gsgo", "GO terms")
#.........这里部分代码省略.........
示例15: __init__
# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import button [as 别名]
def __init__(self, parent=None, signalManager=None,
name="Databases update"):
OWWidget.__init__(self, parent, signalManager, name,
wantMainArea=False)
self.searchString = ""
fbox = gui.widgetBox(self.controlArea, "Filter")
self.completer = TokenListCompleter(
self, caseSensitivity=Qt.CaseInsensitive)
self.lineEditFilter = QLineEdit(textChanged=self.SearchUpdate)
self.lineEditFilter.setCompleter(self.completer)
fbox.layout().addWidget(self.lineEditFilter)
box = gui.widgetBox(self.controlArea, "Files")
self.filesView = QTreeWidget(self)
self.filesView.setHeaderLabels(
["", "Data Source", "Update", "Last Updated", "Size"])
self.filesView.setRootIsDecorated(False)
self.filesView.setUniformRowHeights(True)
self.filesView.setSelectionMode(QAbstractItemView.NoSelection)
self.filesView.setSortingEnabled(True)
self.filesView.sortItems(1, Qt.AscendingOrder)
self.filesView.setItemDelegateForColumn(
0, UpdateOptionsItemDelegate(self.filesView))
self.filesView.model().layoutChanged.connect(self.SearchUpdate)
box.layout().addWidget(self.filesView)
box = gui.widgetBox(self.controlArea, orientation="horizontal")
self.updateButton = gui.button(
box, self, "Update all",
callback=self.UpdateAll,
tooltip="Update all updatable files",
)
self.downloadButton = gui.button(
box, self, "Download all",
callback=self.DownloadFiltered,
tooltip="Download all filtered files shown"
)
self.cancelButton = gui.button(
box, self, "Cancel", callback=self.Cancel,
tooltip="Cancel scheduled downloads/updates."
)
self.retryButton = gui.button(
box, self, "Reconnect", callback=self.RetrieveFilesList
)
self.retryButton.hide()
gui.rubber(box)
self.warning(0)
box = gui.widgetBox(self.controlArea, orientation="horizontal")
gui.rubber(box)
self.infoLabel = QLabel()
self.infoLabel.setAlignment(Qt.AlignCenter)
self.controlArea.layout().addWidget(self.infoLabel)
self.infoLabel.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Fixed)
self.updateItems = []
self.resize(800, 600)
self.progress = ProgressState(self, maximum=3)
self.progress.valueChanged.connect(self._updateProgress)
self.progress.rangeChanged.connect(self._updateProgress)
self.executor = ThreadExecutor(
threadPool=QThreadPool(maxThreadCount=2)
)
task = Task(self, function=self.RetrieveFilesList)
task.exceptionReady.connect(self.HandleError)
task.start()
self._tasks = []
self._haveProgress = False