Python OWGUI.createTabPage方法代码示例

# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import createTabPage [as 别名]
    def __init__(self, parent=None, signalManager = None):
#        self.callbackDeposit = [] # deposit for OWGUI callback functions
        OWWidget.__init__(self, parent, signalManager, 'Expression Profiles', 1)

        #set default settings
        self.ShowAverageProfile = 1
        self.ShowSingleProfiles = 0
        self.PointWidth = 2
        self.CurveWidth = 1
        self.AverageCurveWidth = 4
        self.BoxPlotWidth = 2
        self.SelectedClasses = []
        self.Classes = []
        self.autoSendSelected = 0
        self.selectionChangedFlag = False

        self.CutLow = 0; self.CutHigh = 0; self.CutEnabled = 0
        
        self.profileLabel = None

        #load settings
        self.loadSettings()

        # GUI
        self.graph = profilesGraph(self, self.mainArea, "")
        self.mainArea.layout().addWidget(self.graph)
        self.graph.hide()
        self.connect(self.graphButton, SIGNAL("clicked()"), self.graph.saveToFile)

        # GUI definition
        self.tabs = OWGUI.tabWidget(self.space)

        # GRAPH TAB
        GraphTab = OWGUI.createTabPage(self.tabs, "Graph")

        ## display options
        self.infoLabel = OWGUI.widgetLabel(OWGUI.widgetBox(GraphTab, "Info"), "No data on input.")
        displayOptBox = OWGUI.widgetBox(GraphTab, "Display") #QVButtonGroup("Display", GraphTab)
        displayOptButtons = ['Majority Class', 'Majority Class Probability', 'Target Class Probability', 'Number of Instances']
        OWGUI.checkBox(displayOptBox, self, 'ShowSingleProfiles', 'Expression Profiles', tooltip='', callback=self.updateShowSingleProfiles)
        OWGUI.checkBox(displayOptBox, self, 'ShowAverageProfile', 'Box Plot', tooltip='', callback=self.updateShowAverageProfile)

        ## class selection (classQLB)
        self.classQVGB = OWGUI.widgetBox(GraphTab, "Classes") #QVGroupBox(GraphTab)
##        self.classQVGB.setTitle("Classes")
        self.classQLB = OWGUI.listBox(self.classQVGB, self, "SelectedClasses", "Classes", selectionMode=QListWidget.MultiSelection, callback=self.classSelectionChange) #QListBox(self.classQVGB)
##        self.classQLB.setSelectionMode(QListBox.Multi)
        self.unselectAllClassedQLB = OWGUI.button(self.classQVGB, self, "Unselect all", callback=self.SUAclassQLB) #QPushButton("(Un)Select All", self.classQVGB)
##        self.connect(self.unselectAllClassedQLB, SIGNAL("clicked()"), self.SUAclassQLB)
##        self.connect(self.classQLB, SIGNAL("selectionChanged()"), self.classSelectionChange)

        ## show single/average profile
##        self.showAverageQLB = QPushButton("Box Plot", self.classQVGB)
##        self.showAverageQLB.setToggleButton(1)
##        self.showAverageQLB.setOn(self.ShowAverageProfile)
##        self.showSingleQLB = QPushButton("Single Profiles", self.classQVGB)
##        self.showSingleQLB.setToggleButton(1)
##        self.showSingleQLB.setOn(self.ShowSingleProfiles)
##        self.connect(self.showAverageQLB, SIGNAL("toggled(bool)"), self.updateShowAverageProfile)
##        self.connect(self.showSingleQLB, SIGNAL("toggled(bool)"), self.updateShowSingleProfiles)

##        self.tabs.insertTab(GraphTab, "Graph")

        # SETTINGS TAB
        SettingsTab = OWGUI.createTabPage(self.tabs, "Settings") #QVGroupBox(self)

        self.profileLabelComboBox = OWGUI.comboBox(SettingsTab, self, 'profileLabel', 'Profile Labels', sendSelectedValue=True, valueType=str)
        OWGUI.hSlider(SettingsTab, self, 'PointWidth', box='Point Width', minValue=0, maxValue=9, step=1, callback=self.updatePointWidth, ticks=1)
        OWGUI.hSlider(SettingsTab, self, 'CurveWidth', box='Profile Width', minValue=1, maxValue=9, step=1, callback=self.updateCurveWidth, ticks=1)
        OWGUI.hSlider(SettingsTab, self, 'AverageCurveWidth', box='Average Profile Width', minValue=1, maxValue=9, step=1, callback=self.updateAverageCurveWidth, ticks=1)
        OWGUI.hSlider(SettingsTab, self, 'BoxPlotWidth', box='Box Plot Width', minValue=0, maxValue=9, step=1, callback=self.updateBoxPlotWidth, ticks=1)
        OWGUI.checkBox(SettingsTab, self, 'graph.renderAntialiased', "Render antialiased", callback=self.graph.setCurveRenderHints)


    ## graph y scale
        box = OWGUI.widgetBox(SettingsTab, "Threshold/ Values") #QVButtonGroup("Threshol/ Values", SettingsTab)
        OWGUI.checkBox(box, self, 'CutEnabled', "Enabled", callback=self.setCutEnabled)
        self.sliderCutLow = OWGUI.qwtHSlider(box, self, 'CutLow', label='Low:', labelWidth=33, minValue=-20, maxValue=0, step=0.1, precision=1, ticks=0, maxWidth=80, callback=self.updateYaxis)
        self.sliderCutHigh = OWGUI.qwtHSlider(box, self, 'CutHigh', label='High:', labelWidth=33, minValue=0, maxValue=20, step=0.1, precision=1, ticks=0, maxWidth=80, callback=self.updateYaxis)
        if not self.CutEnabled:
            self.sliderCutLow.box.setDisabled(1)
            self.sliderCutHigh.box.setDisabled(1)

##        self.tabs.insertTab(SettingsTab, "Settings")

        self.toolbarSelection = ZoomSelectToolbar(self, self.controlArea, self.graph, self.autoSendSelected, buttons=(ZoomSelectToolbar.IconZoom, ZoomSelectToolbar.IconPan, ZoomSelectToolbar.IconSelect, ZoomSelectToolbar.IconSpace,
                                                                       ZoomSelectToolbar.IconRemoveLast, ZoomSelectToolbar.IconRemoveAll, ZoomSelectToolbar.IconSendSelection))
        cb = OWGUI.checkBox(self.controlArea, self, "autoSendSelected", "Auto send on selection change")
        OWGUI.setStopper(self, self.toolbarSelection.buttonSendSelections, cb, "selectionChangedFlag", self.commit)
        
        # inputs
        # data and graph temp variables
        
        self.inputs = [("Examples", ExampleTable, self.data, Default + Multiple)]
        self.outputs = [("Examples", ExampleTable, Default)]

        # temp variables
        self.MAdata = []
        self.classColor = None
        self.classBrighterColor = None
#.........这里部分代码省略.........

# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import createTabPage [as 别名]
    def __init__(self, parent=None, signalManager = None, name='GSEA'):
        OWWidget.__init__(self, parent, signalManager, name)

        self.inputs = [("Examples", ExampleTable, self.setData)]
        self.outputs = [("Examples with selected genes only", ExampleTable), ("Results", ExampleTable), ("Distance Matrix", orange.SymMatrix) ]

        self.res = None
        self.dm = None
        
        self.name = 'GSEA'
        self.minSubsetSize = 3
        self.minSubsetSizeC = True
        self.maxSubsetSize = 1000
        self.maxSubsetSizeC = True
        self.minSubsetPart = 10
        self.minSubsetPartC = True
        self.perms = 100
        self.csgm = False
        self.gsgo = False
        self.gskegg = False
        self.buildDistances = False
        self.selectedPhenVar = 0
        self.organismIndex = 0
        self.atLeast = 3

        self.permutationTypes =  [("Phenotype", "p"),("Gene", "g") ]
        self.ptype = 0

        self.correlationTypes = [ ("Signal2Noise", "s2n") ]
        self.ctype = 0
        
        self.data = None
        self.geneSets = {}

        self.tabs = OWGUI.tabWidget(self.controlArea)

        ca = OWGUI.createTabPage(self.tabs, "Basic")

        box = OWGUI.widgetBox(ca, 'Organism')
        #FROM KEGG WIDGET - organism selection
        self.organismTaxids = []
        self.organismComboBox = cb = OWGUI.comboBox(box, self, "organismIndex", items=[], debuggingEnabled=0) #changed
        cb.setMaximumWidth(200)

        #OWGUI.checkBox(box, self, "csgm", "Case sensitive gene matching")

        box2 = OWGUI.widgetBox(ca, "Descriptors")
        self.phenCombo = OWGUI.comboBox(box2, self, "selectedPhenVar", items=[], callback=self.phenComboChange, label="Phenotype:")
        self.geneCombo = OWGUI.comboBox(box2, self, "selectedGeneVar", items=[], label = "Gene:")

        self.allowComboChangeCallback = False

        ma = self.mainArea

        self.listView = QTreeWidget(ma)
        ma.layout().addWidget(self.listView)
        self.listView.setAllColumnsShowFocus(1)
        self.listView.setColumnCount(9)
        self.listView.setHeaderLabels(["Collection", "Geneset", "NES", "ES", "P-value", "FDR", "Size", "Matched Size", "Genes"])
        
        self.listView.header().setStretchLastSection(True)
        self.listView.header().setClickable(True)
        self.listView.header().setSortIndicatorShown(True)
        self.listView.setSortingEnabled(True)
        #self.listView.header().setResizeMode(0, QHeaderView.Stretch)
        
        self.listView.setSelectionMode(QAbstractItemView.NoSelection)
        self.connect(self.listView, SIGNAL("itemSelectionChanged()"), self.newPathwaySelected)

        OWGUI.separator(ca)

        OWGUI.widgetLabel(ca, "Phenotype selection:")
        self.psel = PhenotypesSelection(ca)
        
        self.resize(600,50)
 
        OWGUI.separator(ca)

        OWGUI.checkBox(ca, self, "buildDistances", "Compute geneset distances")

        self.btnApply = OWGUI.button(ca, self, "&Compute", callback = self.compute, disabled=0)
        
        fileBox = OWGUI.widgetBox(ca, orientation='horizontal')
        OWGUI.button(fileBox, self, "Load", callback = self.loadData, disabled=0, debuggingEnabled=0)
        OWGUI.button(fileBox, self, "Save", callback = self.saveData, disabled=0, debuggingEnabled=0)
 
        #ca.layout().addStretch(1)

        ca = OWGUI.createTabPage(self.tabs, "Gene sets")
        
        box = OWGUI.widgetBox(ca)

        self.gridSel = []
        self.geneSel = []  #FIXME temporary disabled - use the same as in new "David" widget
        self.lbgs = OWGUI.listBox(box, self, "gridSel", "geneSel", selectionMode = QListWidget.MultiSelection)
        OWGUI.button(box, self, "From &File", callback = self.addCollection, disabled=0, debuggingEnabled=0)

        box = OWGUI.widgetBox(box, "Additional sources:")
        OWGUI.checkBox(box, self, "gskegg", "KEGG pathways")
        OWGUI.checkBox(box, self, "gsgo", "GO terms")
#.........这里部分代码省略.........

# 需要导入模块: from Orange.OrangeWidgets import OWGUI [as 别名]
# 或者: from Orange.OrangeWidgets.OWGUI import createTabPage [as 别名]
    def __init__(self, parent=None, signalManager=None):
        OWWidget.__init__(self, parent, signalManager, "Parallel Coordinates", True)

        #add a graph widget
        self.graph = OWParallelGraph(self, self.mainArea)
        self.mainArea.layout().addWidget(self.graph)

        self.showAllAttributes = 0

        self.inputs = [("Data", ExampleTable, self.setData, Default),
                       ("Data Subset", ExampleTable, self.setSubsetData),
                       ("Features", AttributeList, self.setShownAttributes)]
        self.outputs = [("Selected Data", ExampleTable),
                        ("Other Data", ExampleTable),
                        ("Features", AttributeList)]

        #set default settings
        self.data = None
        self.subsetData = None
        self.autoSendSelection = 1
        self.attrDiscOrder = "Unordered"
        self.attrContOrder = "Unordered"
        self.projections = None
        self.correlationDict = {}
        self.middleLabels = "Correlations"
        self.attributeSelectionList = None
        self.toolbarSelection = 0
        self.colorSettings = None
        self.selectedSchemaIndex = 0

        self.graph.jitterSize = 10
        self.graph.showDistributions = 1
        self.graph.showStatistics = 0
        self.graph.showAttrValues = 1
        self.graph.useSplines = 0
        self.graph.enabledLegend = 1

        #load settings
        self.loadSettings()

        #GUI
        self.tabs = OWGUI.tabWidget(self.controlArea)
        self.GeneralTab = OWGUI.createTabPage(self.tabs, "Main")
        self.SettingsTab = OWGUI.createTabPage(self.tabs, "Settings")

        self.createShowHiddenLists(self.GeneralTab, callback=self.updateGraph)
        self.connect(self.shownAttribsLB, SIGNAL('itemDoubleClicked(QListWidgetItem*)'), self.flipAttribute)

        self.optimizationDlg = ParallelOptimization(self, signalManager=self.signalManager)
        self.optimizationDlgButton = OWGUI.button(self.GeneralTab, self, "Optimization Dialog",
                                                  callback=self.optimizationDlg.reshow, debuggingEnabled=0)

        self.zoomSelectToolbar = OWToolbars.ZoomSelectToolbar(self, self.GeneralTab, self.graph, self.autoSendSelection,
                                                              buttons=(1, 2, 0, 7, 8))
        self.connect(self.zoomSelectToolbar.buttonSendSelections, SIGNAL("clicked()"), self.sendSelections)

        #connect controls to appropriate functions
        self.connect(self.graphButton, SIGNAL("clicked()"), self.graph.saveToFile)

        # ####################################
        # SETTINGS functionality
        box = OWGUI.widgetBox(self.SettingsTab, "Transparency")
        OWGUI.hSlider(box, self, 'graph.alphaValue', label="Examples: ", minValue=0, maxValue=255, step=10,
                      callback=self.updateGraph, tooltip="Alpha value used for drawing example lines")
        OWGUI.hSlider(box, self, 'graph.alphaValue2', label="Rest:     ", minValue=0, maxValue=255, step=10,
                      callback=self.updateGraph, tooltip="Alpha value used to draw statistics, example subsets, ...")

        box = OWGUI.widgetBox(self.SettingsTab, "Jittering Options")
        OWGUI.comboBox(box, self, "graph.jitterSize", label='Jittering size (% of size):  ', orientation='horizontal',
                       callback=self.setJitteringSize, items=self.jitterSizeNums, sendSelectedValue=1, valueType=float)

        # visual settings
        box = OWGUI.widgetBox(self.SettingsTab, "Visual Settings")

        OWGUI.checkBox(box, self, 'graph.showAttrValues', 'Show attribute values', callback=self.updateGraph)
        OWGUI.checkBox(box, self, 'graph.useAntialiasing', 'Use antialiasing', callback=self.updateGraph)
        OWGUI.checkBox(box, self, 'graph.useSplines', 'Show splines', callback=self.updateGraph,
                       tooltip="Show lines using splines")
        OWGUI.checkBox(box, self, 'graph.enabledLegend', 'Show legend', callback=self.updateGraph)

        box = OWGUI.widgetBox(self.SettingsTab, "Axis Distance")
        resizeColsBox = OWGUI.widgetBox(box, 0, "horizontal", 0)
        OWGUI.label(resizeColsBox, self, "Increase/decrease distance: ")
        OWGUI.toolButton(resizeColsBox, self, "+", callback=self.increaseAxesDistance,
                         tooltip="Increase the distance between the axes", width=30, height=20)
        OWGUI.toolButton(resizeColsBox, self, "-", callback=self.decreaseAxesDistance,
                         tooltip="Decrease the distance between the axes", width=30, height=20)
        OWGUI.rubber(resizeColsBox)
        OWGUI.checkBox(box, self, "graph.autoUpdateAxes", "Auto scale X axis",
                       tooltip="Auto scale X axis to show all visualized attributes", callback=self.updateGraph)

        box = OWGUI.widgetBox(self.SettingsTab, "Statistical Information")
        OWGUI.comboBox(box, self, "graph.showStatistics", label="Statistics: ", orientation="horizontal", labelWidth=90,
                       items=["No statistics", "Means, deviations", "Median, quartiles"], callback=self.updateGraph,
                       sendSelectedValue=0, valueType=int)
        OWGUI.comboBox(box, self, "middleLabels", label="Middle labels: ", orientation="horizontal", labelWidth=90,
                       items=["No labels", "Correlations", "VizRank"], callback=self.updateGraph,
                       tooltip="The information do you wish to view on top in the middle of coordinate axes",
                       sendSelectedValue=1, valueType=str)
        OWGUI.checkBox(box, self, 'graph.showDistributions', 'Show distributions', callback=self.updateGraph,
#.........这里部分代码省略.........