本文整理汇总了Python中Helper.printPairsToFile方法的典型用法代码示例。如果您正苦于以下问题：Python Helper.printPairsToFile方法的具体用法？Python Helper.printPairsToFile怎么用？Python Helper.printPairsToFile使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Helper的用法示例。
在下文中一共展示了Helper.printPairsToFile方法的3个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: resultfiletopairs
# 需要导入模块: import Helper [as 别名]
# 或者: from Helper import printPairsToFile [as 别名]
def resultfiletopairs(filename, outname):
print "init gene level proteins ..."
proteinsA, proteinsB, orthologs = GeneLevelProtein.initGeneLevelProteins(filename, None, None, False)
print "pairwise orthology mappings ..."
pairwise = Helper.pairwiseOrthologs(orthologs, proteinsA, proteinsB)
Helper.printPairsToFile(pairwise, outname)示例2: str
# 需要导入模块: import Helper [as 别名]
# 或者: from Helper import printPairsToFile [as 别名]
modMeanA = str(float(sum(countsA))/float(countMissingA))
if countMissingB > 0:
modMeanB = str(float(sum(countsB))/float(countMissingB))
outcsv = "/Users/verenahaunschmid/Documents/FH/semester06/Praktikum/BasedOnInparanoidData/recapturestats.csv"
if not os.path.exists(outcsv):
out = open(outcsv, "w")
out.write(";".join(["taxA", "taxB", "dAB", "dBA", "pairs", "groups", "inparalogs_A", "inparalogs_B", "recappairs", "recapgroups", "avg_missing_A", "avg_missing_B", "missing_A", "missing_B", "mod_mean_A", "mod_mean_B"]))
out.write("\n")
out.close()
out = open(outcsv, "a")
line = ";".join([taxA, taxB, str(dAB), str(dBA), str(len(pairs)), str(len(groups)), str(sum(lengthsA)), str(sum(lengthsB)), recapable, recapgroups, meanA, meanB, str(countMissingA), str(countMissingB), modMeanA, modMeanB])
out.write(line+"\n")
out.close()
Helper.printPairsToFile(pairs, outname)
print recapable, "can be recaptured and", missing, "can't"
print recapgroups, "groups can be recaptured and", notrecapgroups, "can't"
print "on average", meanA, "A inparalogs are missing from a group"
print "on average", meanB, "B inparalogs are missing from a group"
print notrecapgroups, "groups can not be recaptured"
print countMissingA, "groups miss at least one inparalog from organism A, on average", modMeanA
print countMissingB, "groups miss at least one inparalog from organism B, on average", modMeanB
#outnot = open("/Users/verenahaunschmid/Documents/FH/semester06/Praktikum/InParanoid/AversusB/recap/notrecap.txt", "w")
outnot = open(filename + ".notrecap.txt", "w")
for group in cannotrecapgroups:
outnot.write("-------\n")
outnot.write("Inparalogs A:\n")示例3: filtered
# 需要导入模块: import Helper [as 别名]
# 或者: from Helper import printPairsToFile [as 别名]
outhandle.write(str(len(filteredAllDomains)) + " when filtered (50) - " + percentage(filteredAllDomains) + "%\n")
outhandle.write(str(len(notAll)) + " ortholog pairs that are not supported by all their domains - "+ percentage(notAll) +"%\n")
outhandle.write(str(len(filteredSome30)) + " when filtered (30) - " + percentage(filteredSome30) + "%\n")
outhandle.write(str(len(filteredSome)) + " when filtered (50)" + percentage(filteredSome) +"%\n")
assert len(counters) - len(allDomains) - len(notAll) == len(notAny)
outhandle.write(str(len(notAny)) + " ortholog pairs that were not supported by any domains - " + percentage(notAny) + "%\n")
#outhandle.write(str(len(filteredNotAny)) + " when filtered\n")
outhandle.write(str(len(onlyByDomains)) + " ortholog pairs that are supported by all their constituent domains but not by the full sequence - " + percentage(onlyByDomains) +"%\n")
outhandle.write(str(len(filteredOnlyByDomains30)) + " when filtered (30) \n")
outhandle.write(str(len(filteredOnlyByDomains)) + " when filtered (50) \n")
outhandle.close()
if write:
# writing orthology groups to different files
Helper.printPairsToFile(counters, resultpath+"FullSequencesOrthologs"+outname)
Helper.printPairsToFile(pairwiseDomains, resultpath+"PairwiseDomains"+outname)
Helper.printPairsToFile(mapping, resultpath+"DomainsMappedToProteins"+outname)
Helper.printPairsToFile(allDomains, resultpath+"AllDomains"+outname)
Helper.printPairsToFile(onlyByDomains, resultpath+"OnlyByDomains"+outname)
Helper.printPairsToFile(notAny, resultpath+"NotAnyDomains"+outname)
Helper.printPairsToFile(notAll, resultpath+"NotAllDomains"+outname)
# filtered stuff
Helper.printPairsToFile(filteredOnlyByDomains, resultpath+"FilteredOnlyByDomains"+outname)
Helper.printPairsToFile(filteredAllDomains, resultpath+"FilteredAllDomains"+outname)
Helper.printPairsToFile(filteredSome, resultpath+"FilteredNotAllDomains"+outname)
Helper.printPairsToFile(filteredOnlyByDomains30, resultpath+"FilteredOnlyByDomains30"+outname)
Helper.printPairsToFile(filteredAllDomains30, resultpath+"FilteredAllDomains30"+outname)