本文整理汇总了Java中htsjdk.samtools.SAMRecord.getReadGroup方法的典型用法代码示例。如果您正苦于以下问题：Java SAMRecord.getReadGroup方法的具体用法？Java SAMRecord.getReadGroup怎么用？Java SAMRecord.getReadGroup使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类htsjdk.samtools.SAMRecord的用法示例。
在下文中一共展示了SAMRecord.getReadGroup方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Java代码示例。
示例1: GATKSAMRecord
import htsjdk.samtools.SAMRecord; //导入方法依赖的package包/类
/**
* HACK TO CREATE GATKSAMRECORD BASED ONLY A SAMRECORD FOR TESTING PURPOSES ONLY
* @param read
*/
public GATKSAMRecord(final SAMRecord read) {
super(read.getHeader());
setReferenceIndex(read.getReferenceIndex());
setAlignmentStart(read.getAlignmentStart());
mReadNameLength = (short)read.getReadNameLength();
setMappingQuality(read.getMappingQuality());
mCigarLength = read.getCigarLength();
setFlags(read.getFlags());
mReadLength = read.getReadLength();
setMateReferenceIndex(read.getMateReferenceIndex());
setMateAlignmentStart(read.getMateAlignmentStart());
setInferredInsertSize(read.getInferredInsertSize());
mRestOfBinaryData = null;
super.setReadName(read.getReadName());
super.setCigarString(read.getCigarString());
super.setReadBases(read.getReadBases());
super.setBaseQualities(read.getBaseQualities());
SAMReadGroupRecord samRG = read.getReadGroup();
clearAttributes();
if (samRG != null) {
GATKSAMReadGroupRecord rg = new GATKSAMReadGroupRecord(samRG);
setReadGroup(rg);
}
List<SAMTagAndValue> attributes = read.getAttributes();
for(SAMTagAndValue tagAndValue : attributes) {
setAttribute(tagAndValue.tag, tagAndValue.value);
}
}