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C# ISequence.ConvertToString方法代码示例

本文整理汇总了C#中ISequence.ConvertToString方法的典型用法代码示例。如果您正苦于以下问题:C# ISequence.ConvertToString方法的具体用法?C# ISequence.ConvertToString怎么用?C# ISequence.ConvertToString使用的例子?那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在ISequence的用法示例。


在下文中一共展示了ISequence.ConvertToString方法的1个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的C#代码示例。

示例1: Create

        /// <summary>
        /// The create DNA sequence.
        /// </summary>
        /// <param name="sequence">
        /// The common sequence.
        /// </param>
        /// <param name="fastaSequence">
        /// Sequence as <see cref="ISequence"/>>.
        /// </param>
        /// <param name="partial">
        /// The partial.
        /// </param>
        /// <exception cref="Exception">
        /// Thrown if at least one element of new sequence is missing in db
        /// or if sequence is empty or invalid.
        /// </exception>
        public void Create(CommonSequence sequence, ISequence fastaSequence, bool partial)
        {
            // TODO: fix it for batch import or remove fasta headers completely
            string fastaHeader = ">" + fastaSequence.ID;

            if (fastaHeader.Contains("Resource temporarily unavailable"))
            {
                throw new Exception("Sequence is empty or invalid (probably ncbi is not responding).");
            }

            string stringSequence = fastaSequence.ConvertToString().ToUpper();

            var chain = new BaseChain(stringSequence);

            if (!ElementRepository.ElementsInDb(chain.Alphabet, sequence.NotationId))
            {
                throw new Exception("At least one element of new sequence is invalid (not A, C, T, G or U).");
            }

            MatterRepository.CreateMatterFromSequence(sequence);

            var alphabet = ElementRepository.ToDbElements(chain.Alphabet, sequence.NotationId, false);
            Create(sequence, partial, alphabet, chain.Building);
        }
开发者ID:intervals-mining-lab,项目名称:libiada-web,代码行数:40,代码来源:DnaSequenceRepository.cs


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