本文整理汇总了C++中bam_record::mate_target_id方法的典型用法代码示例。如果您正苦于以下问题：C++ bam_record::mate_target_id方法的具体用法？C++ bam_record::mate_target_id怎么用？C++ bam_record::mate_target_id使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类bam_record的用法示例。
在下文中一共展示了bam_record::mate_target_id方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。
示例1: minSize
bool
isMateInsertionEvidenceCandidate(
const bam_record& bamRead,
const unsigned minMapq)
{
if (! bamRead.is_paired()) return false;
if (bamRead.isNonStrictSupplement()) return false;
if (bamRead.is_unmapped() || bamRead.is_mate_unmapped()) return false;
if (bamRead.map_qual() < minMapq) return false;
if (bamRead.target_id() < 0) return false;
if (bamRead.mate_target_id() < 0) return false;
if (bamRead.target_id() != bamRead.mate_target_id()) return true;
/// TODO: better candidate definition based on fragment size distro:
static const int minSize(10000);
return (std::abs(bamRead.pos()-bamRead.mate_pos()) >= minSize);
}示例2: classifySize
FragmentSizeType::index_t
SVLocusScanner::
_getFragmentSizeType(
const bam_record& bamRead,
const unsigned defaultReadGroupIndex) const
{
using namespace FragmentSizeType;
if (bamRead.target_id() != bamRead.mate_target_id()) return DISTANT;
const int32_t fragmentSize(std::abs(bamRead.template_size()));
return classifySize(_stats[defaultReadGroupIndex], fragmentSize);
}