本文整理汇总了C++中bam_record::is_proper_pair方法的典型用法代码示例。如果您正苦于以下问题：C++ bam_record::is_proper_pair方法的具体用法？C++ bam_record::is_proper_pair怎么用？C++ bam_record::is_proper_pair使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类bam_record的用法示例。
在下文中一共展示了bam_record::is_proper_pair方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。
示例1: isRemote
/// get SV candidates from anomalous read pairs
static
void
getSVCandidatesFromPair(
const ReadScannerOptions& opt,
const ReadScannerDerivOptions& dopt,
const SVLocusScanner::CachedReadGroupStats& rstats,
const bam_record& localRead,
const SimpleAlignment& localAlign,
const bam_record* remoteReadPtr,
std::vector<SVObservation>& candidates)
{
if (! localRead.is_paired()) return;
// don't count paired end evidence from SA-split reads twice:
if (localRead.isNonStrictSupplement()) return;
if (localRead.is_unmapped() || localRead.is_mate_unmapped()) return;
// special case typically used for RNA-Seq analysis:
if (opt.isIgnoreAnomProperPair && localRead.is_proper_pair()) return;
// abstract remote alignment to SimpleAlignment object:
const bool isRemote(nullptr != remoteReadPtr);
const SimpleAlignment remoteAlign(isRemote ? getAlignment(*remoteReadPtr) : getFakeMateAlignment(localRead));
AlignmentPairAnalyzer pairInspector(opt, dopt, rstats);
pairInspector.reset(localAlign, remoteAlign, isRemote, localRead.is_first());
if (! pairInspector.computeLargeEventRegionScale()) return;
candidates.emplace_back();
pairInspector.getSVObservation(candidates.back());
#ifdef DEBUG_SCANNER
log_os << __FUNCTION__ << " evaluating pair sv for inclusion: " << candidates.back() << "\n";
#endif
}