本文整理汇总了C++中alignment::empty方法的典型用法代码示例。如果您正苦于以下问题：C++ alignment::empty方法的具体用法？C++ alignment::empty怎么用？C++ alignment::empty使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类alignment的用法示例。
在下文中一共展示了alignment::empty方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。
示例1: n_seg
void
starling_read::
set_genome_align(const alignment& al) {
assert(get_full_segment().genome_align().empty());
assert(! al.empty());
get_full_segment()._genome_align=al;
const seg_id_t n_seg(apath_exon_count(al.path));
if(n_seg<=1) return;
// deal with segmented reads now:
assert(! is_segmented());
_segment_ptr.reset(new starling_segmented_read(n_seg));
using namespace ALIGNPATH;
seg_id_t seg_id(1);
pos_t read_pos(0);
pos_t ref_pos(al.pos);
pos_t seg_start_read_pos(read_pos);
pos_t seg_start_ref_pos(ref_pos);
path_t seg_path;
const unsigned as(al.path.size());
for(unsigned i(0); i<as; ++i) {
const path_segment& ps(al.path[i]);
const pos_t last_read_pos(read_pos);
if(is_segment_type_ref_length(ps.type)) ref_pos += ps.length;
if(is_segment_type_read_length(ps.type)) read_pos += ps.length;
if(ps.type!=SKIP) seg_path.push_back(ps);
if(ps.type==SKIP || ((i+1)==as)) {
const pos_t end_read_pos( (ps.type==SKIP) ?
last_read_pos : read_pos );
assert(end_read_pos>seg_start_read_pos);
const unsigned size(end_read_pos-seg_start_read_pos);
const read_segment rseg(size,seg_start_read_pos,this);
_segment_ptr->set_segment(seg_id,rseg);
alignment& new_al(get_segment(seg_id)._genome_align);
new_al.path=seg_path;
new_al.pos=seg_start_ref_pos;
new_al.is_fwd_strand=al.is_fwd_strand;
seg_id++;
seg_start_read_pos=read_pos;
seg_start_ref_pos=ref_pos;
seg_path.clear();
}
}
}