本文整理汇总了C++中Pair::insertA方法的典型用法代码示例。如果您正苦于以下问题：C++ Pair::insertA方法的具体用法？C++ Pair::insertA怎么用？C++ Pair::insertA使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Pair的用法示例。
在下文中一共展示了Pair::insertA方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。
示例1: if
Pair *Smith_Waterman::align( )
{
// construct the pair object...
Pair *pair = new Pair( );
// construct the table...
vector<vector<int> >grid(first->size( ) + 1, vector<int>(second->size( ), 0));
unsigned int i;
unsigned int j;
// set initial penalty values
for (i = 0; i < first->size( ); i++)
{
grid[i][0] = i * penalty;
}
for (j = 0; j < second->size( ); j++)
{
grid[0][j] = j * penalty;
}
// set initial values according to sub_matrix
for (i = 1; i < first->size( ); i++)
{
for (j = 1; j < second->size( ); j++)
{
grid[i][j] = sub->getScore(first->at((i - 1) * sizeof(char)), second->at((j - 1) * sizeof(char)));
}
}
/* print the grid
for (i = 0; i < first->size( ); i++)
{
for (j = 0; j < second->size( ); j++)
{
cout << "\t" << grid[i][j];
}
cout << endl;
}
cout << endl << endl;*/
// score the table...
int match = 0;
int insertion = 0;
int deletion = 0;
for (i = 1; i < first->size( ); i++)
{
for (j = 1; j < second->size( ); j++)
{
match = grid[i - 1][j - 1] + sub->getScore(first->at((i - 1) * sizeof(char)), second->at((j - 1) * sizeof(char)));
insertion = grid[i][j - 1] + penalty;
deletion = grid[i - 1][j] + penalty;
grid[i][j] = max(max(match, insertion), deletion);
if (grid[i][j] < 0)
{
grid[i][j] = 0;
}
// cout << "\nInserting " << grid[i][j] << " into " << i << ", " << j;
}
}
// trace back to find the alignment...
string out1("");
string out2("");
// find highest value
int highest = 0;
for (unsigned int iTest = 0; iTest < first->size( ) - 1; iTest++)
{
for (unsigned int jTest = 0; jTest < second->size( ) - 1; jTest++)
{
if (grid[iTest][jTest] >= highest)
{
highest = grid[iTest][jTest];
i = iTest;
j = jTest;
}
}
}
// i = first->size() - 1;
// j = second->size() - 1;
int score;
int score_diagonal;
int score_up;
int score_left;
int matches = 0;
while (i > 0 && j > 0)
{
score = grid[i][j];
score_diagonal = grid[i - 1][j - 1];
score_up = grid[i][j - 1];
score_left = grid[i - 1][j];
if (score == score_diagonal + sub->getScore(first->at((i - 1) * sizeof(char)), second->at((j - 1) * sizeof(char))))
{
pair->insertA(first->at((i - 1) * sizeof(char)));
pair->insertB(second->at((j - 1) * sizeof(char)));
//.........这里部分代码省略.........