本文整理汇总了C++中BottomSegmentIteratorPtr::getReversed方法的典型用法代码示例。如果您正苦于以下问题：C++ BottomSegmentIteratorPtr::getReversed方法的具体用法？C++ BottomSegmentIteratorPtr::getReversed怎么用？C++ BottomSegmentIteratorPtr::getReversed使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类BottomSegmentIteratorPtr的用法示例。
在下文中一共展示了BottomSegmentIteratorPtr::getReversed方法的3个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。
示例1: checkCallBack
void TopSegmentIteratorReverseTest::checkCallBack(const Alignment *alignment) {
BottomSegmentIteratorPtr bi;
TopSegmentIteratorPtr ti, ti2;
const Genome *parent1 = alignment->openGenome("parent1");
const Genome *child1 = alignment->openGenome("child1");
ti = child1->getTopSegmentIterator();
bi = parent1->getBottomSegmentIterator();
ti2 = child1->getTopSegmentIterator();
ti2->toChild(bi, 0);
CuAssertTrue(_testCase, ti->getStartPosition() == 0);
CuAssertTrue(_testCase, ti->getLength() == 10);
CuAssertTrue(_testCase, ti->getReversed() == false);
CuAssertTrue(_testCase, ti2->getStartPosition() == 9);
CuAssertTrue(_testCase, ti2->getLength() == 10);
CuAssertTrue(_testCase, ti2->getReversed() == true);
bi->slice(1, 3);
ti2->toChild(bi, 0);
CuAssertTrue(_testCase, bi->getStartPosition() == 1);
CuAssertTrue(_testCase, bi->getLength() == 6);
CuAssertTrue(_testCase, ti2->getStartPosition() == 8);
CuAssertTrue(_testCase, ti2->getLength() == 6);
string buffer;
bi->getString(buffer);
CuAssertTrue(_testCase, buffer == "CCTACG");
ti2->getString(buffer);
CuAssertTrue(_testCase, buffer == "CACGTA");
bi = child1->getBottomSegmentIterator();
CuAssertTrue(_testCase, bi->getReversed() == false);
ti->toParseUp(bi);
CuAssertTrue(_testCase, ti->getStartPosition() == 0);
CuAssertTrue(_testCase, ti->getLength() == 5);
bi->toReverse();
ti->toParseUp(bi);
CuAssertTrue(_testCase, ti->getStartPosition() == 4);
CuAssertTrue(_testCase, ti->getLength() == 5);
bi->toReverse();
CuAssertTrue(_testCase, bi->getReversed() == false);
bi->toRight();
ti->toParseUp(bi);
CuAssertTrue(_testCase, ti->getStartPosition() == 5);
CuAssertTrue(_testCase, ti->getLength() == 5);
bi->toReverse();
ti->toParseUp(bi);
CuAssertTrue(_testCase, ti->getStartPosition() == 9);
CuAssertTrue(_testCase, ti->getLength() == 5);
}示例2: toRightNextUngapped
void GappedBottomSegmentIterator::toRightNextUngapped(BottomSegmentIteratorPtr botSegIt) const {
while (botSegIt->bseg()->hasChild(_childIndex) == false && botSegIt->getLength() <= _gapThreshold) {
if ((!botSegIt->getReversed() && botSegIt->getBottomSegment()->isLast()) ||
(botSegIt->getReversed() && botSegIt->getBottomSegment()->isFirst())) {
break;
}
botSegIt->toRight();
}
}示例3: toLeftNextUngapped
void GappedBottomSegmentIterator::toLeftNextUngapped(BottomSegmentIteratorPtr botSegIt) const {
// FIXME: should be methods of BottomSegmentIterator?
// FIXME: these are identical in halGappedTopSegmentIterator.
while (botSegIt->bseg()->hasChild(_childIndex) == false && botSegIt->getLength() <= _gapThreshold) {
if ((!botSegIt->getReversed() && botSegIt->getBottomSegment()->isFirst()) ||
(botSegIt->getReversed() && botSegIt->getBottomSegment()->isLast())) {
break;
}
botSegIt->toLeft();
}
}