本文整理汇总了C++中BottomSegmentIteratorPtr::atEnd方法的典型用法代码示例。如果您正苦于以下问题：C++ BottomSegmentIteratorPtr::atEnd方法的具体用法？C++ BottomSegmentIteratorPtr::atEnd怎么用？C++ BottomSegmentIteratorPtr::atEnd使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类BottomSegmentIteratorPtr的用法示例。
在下文中一共展示了BottomSegmentIteratorPtr::atEnd方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。
示例1: createCallBack
void TopSegmentIsGapTest::createCallBack(Alignment *alignment) {
size_t numSequences = 3;
vector<Sequence::Info> seqVec(numSequences);
BottomSegmentIteratorPtr bi;
BottomSegmentStruct bs;
TopSegmentIteratorPtr ti;
TopSegmentStruct ts;
Genome *parent1 = alignment->addRootGenome("parent1");
Genome *child1 = alignment->addLeafGenome("child1", "parent1", 1);
// set up two genomes. each with three sequences. each sequence
// with 5 segments of length two. start with segment i in parent
// aligned with segment i in child.
for (size_t i = 0; i < numSequences; ++i) {
string name = "Sequence" + std::to_string(i);
seqVec[i] = Sequence::Info(name, 10, 5, 5);
}
parent1->setDimensions(seqVec);
child1->setDimensions(seqVec);
for (bi = parent1->getBottomSegmentIterator(); not bi->atEnd(); bi->toRight()) {
bs.set(bi->getBottomSegment()->getArrayIndex() * 2, 2);
bs._children.clear();
bs._children.push_back(pair<hal_size_t, bool>(bi->getBottomSegment()->getArrayIndex(), false));
bs.applyTo(bi);
}
for (ti = child1->getTopSegmentIterator(); not ti->atEnd(); ti->toRight()) {
ts.set(ti->getTopSegment()->getArrayIndex() * 2, 2, ti->getTopSegment()->getArrayIndex());
ts.applyTo(ti);
}
// insertion in middle (8th top segment)
bi = parent1->getBottomSegmentIterator(8);
ti = child1->getTopSegmentIterator(8);
assert(bi->getBottomSegment()->getChildIndex(0) == 8 && ti->getTopSegment()->getParentIndex() == 8);
bi->getBottomSegment()->setChildIndex(0, 9);
ti->getTopSegment()->setParentIndex(NULL_INDEX);
ti->toRight();
ti->getTopSegment()->setParentIndex(8);
// insertion at begining (10th top segment)
bi = parent1->getBottomSegmentIterator(10);
ti = child1->getTopSegmentIterator(10);
assert(bi->getBottomSegment()->getChildIndex(0) == 10 && ti->getTopSegment()->getParentIndex() == 10);
bi->getBottomSegment()->setChildIndex(0, 11);
ti->getTopSegment()->setParentIndex(NULL_INDEX);
ti->toRight();
ti->getTopSegment()->setParentIndex(10);
// just having a null parent is not enough for an insertion
bi = parent1->getBottomSegmentIterator(2);
ti = child1->getTopSegmentIterator(2);
assert(bi->getBottomSegment()->getChildIndex(0) == 2 && ti->getTopSegment()->getParentIndex() == 2);
ti->getTopSegment()->setParentIndex(NULL_INDEX);
}