本文整理匯總了Python中paleomix.common.formats.msa.MSA.split方法的典型用法代碼示例。如果您正苦於以下問題：Python MSA.split方法的具體用法？Python MSA.split怎麽用？Python MSA.split使用的例子？那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在類paleomix.common.formats.msa.MSA的用法示例。
在下文中一共展示了MSA.split方法的5個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的Python代碼示例。
示例1: test_msa_split_msa__two_groups
# 需要導入模塊: from paleomix.common.formats.msa import MSA [as 別名]
# 或者: from paleomix.common.formats.msa.MSA import split [as 別名]
def test_msa_split_msa__two_groups():
msa = MSA([FASTA("seq1", None, "ACGCAT"),
FASTA("seq2", None, "GAGTGA")])
expected = {"1": MSA([FASTA("seq1", None, "ACCA"),
FASTA("seq2", None, "GATG")]),
"2": MSA([FASTA("seq1", None, "GT"),
FASTA("seq2", None, "GA")])}
assert_equal(msa.split("112"), expected)示例2: test_msa_split__partial_group
# 需要導入模塊: from paleomix.common.formats.msa import MSA [as 別名]
# 或者: from paleomix.common.formats.msa.MSA import split [as 別名]
def test_msa_split__partial_group():
msa = MSA([FASTA("seq1", None, "ACGCA"),
FASTA("seq2", None, "GAGTG")])
expected = {"1": MSA([FASTA("seq1", None, "AC"),
FASTA("seq2", None, "GT")]),
"2": MSA([FASTA("seq1", None, "CA"),
FASTA("seq2", None, "AG")]),
"3": MSA([FASTA("seq1", None, "G"),
FASTA("seq2", None, "G")])}
assert_equal(msa.split("123"), expected)示例3: test_msa_split__empty_group
# 需要導入模塊: from paleomix.common.formats.msa import MSA [as 別名]
# 或者: from paleomix.common.formats.msa.MSA import split [as 別名]
def test_msa_split__empty_group():
msa = MSA([FASTA("seq1", None, "AC"),
FASTA("seq2", None, "GA")])
expected = {"1": MSA([FASTA("seq1", None, "A"),
FASTA("seq2", None, "G")]),
"2": MSA([FASTA("seq1", None, "C"),
FASTA("seq2", None, "A")]),
"3": MSA([FASTA("seq1", None, ""),
FASTA("seq2", None, "")])}
assert_equal(msa.split("123"), expected)示例4: test_msa_split_msa__no_split_by
# 需要導入模塊: from paleomix.common.formats.msa import MSA [as 別名]
# 或者: from paleomix.common.formats.msa.MSA import split [as 別名]
def test_msa_split_msa__no_split_by():
msa = MSA([FASTA("seq1", None, "ACG"),
FASTA("seq2", None, "GAT")])
msa.split(split_by="")示例5: test_msa_split_msa__single_group
# 需要導入模塊: from paleomix.common.formats.msa import MSA [as 別名]
# 或者: from paleomix.common.formats.msa.MSA import split [as 別名]
def test_msa_split_msa__single_group():
msa = MSA([FASTA("seq1", None, "ACGCAT"),
FASTA("seq2", None, "GAGTGA")])
expected = {'1': copy.copy(msa)}
assert_equal(msa.split("111"), expected)